View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_24 (Length: 252)
Name: NF20692_low_24
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 45043739 - 45043494
Alignment:
| Q |
1 |
tgggaaacatgctgagctcattgctgctaatgttgttggcggcagcagtggaggtggacattctcacaatgaatataatggtaaccacggtcgtgaatac |
100 |
Q |
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| T |
45043739 |
tgggaaacatgctgaactcattgctgctaatgttgttggcggcagc------ggtggacattctcacaatgaatataatggtaaccacggtcgtgaatac |
45043646 |
T |
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| Q |
101 |
cgctataatgaatataatggtgatcagagtcgcggttaccattataatgaatataacggtggacatggaaatgtggtacctagctataactgtattcaat |
200 |
Q |
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| T |
45043645 |
cgctataatgaatataatggtgatcagagtcgcggttaccattataatgaatataacggtggacatggaaatgtggtacctagctataaccgtattcaat |
45043546 |
T |
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| Q |
201 |
atcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatc |
252 |
Q |
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| T |
45043545 |
atcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatc |
45043494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 45043493 - 45043407
Alignment:
| Q |
166 |
tggaaatgtggtacctagctataactgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatc |
252 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| | | |||| ||||| ||| ||||||| |
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| T |
45043493 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatc |
45043407 |
T |
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