View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_27 (Length: 241)
Name: NF20692_low_27
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 30619533 - 30619314
Alignment:
| Q |
8 |
gtgagaagaaatctggagcgttggcatctaccatagggtttacaaagggtggacgtatgcacgtgctctcgtgtgccacacacactaaaaacaatagtca |
107 |
Q |
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| T |
30619533 |
gtgagaagaaatctggagcgttggcatctaccatagggtttacaaagggtggacgtatgcacatgctctcgtgtgccacacacactaaaaacaatagtca |
30619434 |
T |
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| Q |
108 |
ctttgaagttaatgagaaagtaaagcaggctttctagtatcaagttttaatctgcatttcctgctgccaagaacaaaagttagttaaaatcctataaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30619433 |
ctttgaagttaatgagaaagtaaagcaggctttctagtatcaagttttaatctgcatttcctgctgccaagaacaaaagttagttaaaatcctataaaat |
30619334 |
T |
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| Q |
208 |
tttgtctatagttgaaattg |
227 |
Q |
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|||||||||||||||||||| |
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| T |
30619333 |
tttgtctatagttgaaattg |
30619314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 30627711 - 30627493
Alignment:
| Q |
8 |
gtgagaagaaatctggagcgttggcatctaccatagggtttacaaagggtggacgtatgcacgtgctctcgtgtgccacacacactaaaaacaatagtca |
107 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||| | | ||||| |||||||||||||||||| |
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| T |
30627711 |
gtgagaagaaatctggagggttggcatctaacatagggtttacaaagggtggatgtatgcacatgctctc-tctcgcacactcactaaaaacaatagtca |
30627613 |
T |
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| Q |
108 |
ctttgaagttaatgagaaagtaaagcaggctttctagtatcaa--gttttaatctgcatttcctgctgccaagaacaaaagt-tagttaaaatcctataa |
204 |
Q |
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||| || |||||||||| | ||| |||||||| || ||| || ||||||| | ||||| |||||| || ||||||||| ||||| ||||||||||| |
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| T |
30627612 |
ctt--aacttaatgagaacg-aaaacaggctttttaatattaaattttttaatgttcattttctgctgtgaaaaacaaaagtgtagttcaaatcctataa |
30627516 |
T |
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| Q |
205 |
aattttgtctatagttgaaattg |
227 |
Q |
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|||||| ||| |||||||||||| |
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| T |
30627515 |
aattttatctgtagttgaaattg |
30627493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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