View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20692_low_3 (Length: 618)
Name: NF20692_low_3
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_3 |
 | |
|
| [»] scaffold0911 (1 HSPs) |
| | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 11 - 599
Target Start/End: Complemental strand, 10033260 - 10032680
Alignment:
| Q |
11 |
cagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaaaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033260 |
cagaaacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaaaa |
10033161 |
T |
|
| Q |
111 |
tgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagcaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10033160 |
tgtgcaaaatgacttggatttatgggctcacattcgggagtatgatcaacgtatggcaagcgaaggattcacgcaagttttatctaaaaaacagcagcaa |
10033061 |
T |
|
| Q |
211 |
acattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatccgc-g |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10033060 |
acattgaaaaagcatgttttagggaaagcttcgtacaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatccgcgg |
10032961 |
T |
|
| Q |
310 |
tatagcaatgtcagtactatcatctgttaacggcttgaaggttggggtagatgcaattcaacaagatgaagtggtgatgatttctattgcttgcgttgtc |
409 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10032960 |
tatagcaatgtcagtactatcatttgttaacggcttgaaggttggggtagatgcaattcaacaagatgaagtggtgatgatttctattgcttgccttgtc |
10032861 |
T |
|
| Q |
410 |
gttttgttcagtttacaaaagtatggaagtgatggaactagtaaagttgctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatc |
509 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032860 |
gttttgttcagtttacaaaagt---------atggaacaagtaaagttgctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatc |
10032770 |
T |
|
| Q |
510 |
ttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatttctttgcaaggaattcaactaaagcatggtatt |
599 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10032769 |
ttgtcaaatatgacaacaacgtttttagggcttttaatcctattcacatctattatttctttgcaaggaattcaactaaagcatggtatt |
10032680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 41067936 - 41068233
Alignment:
| Q |
9 |
agcagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaa |
108 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
41067936 |
agcagagacagaagctaattcaagtgcagcagctaatgagtttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa |
41068035 |
T |
|
| Q |
109 |
aatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagc |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
41068036 |
aatgttcaaaatgacttggatttatgggctcgcattcgggagtaagatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc |
41068135 |
T |
|
| Q |
209 |
aaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatcc |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41068136 |
aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatcc |
41068233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 8479570 - 8479851
Alignment:
| Q |
9 |
agcagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaa |
108 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
8479570 |
agcagagacagaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccaaggaaatccaggtttcgaaa |
8479669 |
T |
|
| Q |
109 |
aatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagc |
208 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8479670 |
aatgttcaaaatgacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagttttgtctaaaaaacagcagc |
8479769 |
T |
|
| Q |
209 |
aaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttc |
290 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8479770 |
aaacattgaaaaagcaagttttagggaaaacttcgtacaacacccgtgtgaagggttcaactcccccttctcaatgaatttc |
8479851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 264
Target Start/End: Original strand, 10996811 - 10996984
Alignment:
| Q |
90 |
ggaaatccaggttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagtt |
189 |
Q |
| |
|
|||||| ||||||| ||||||| | |||| |||||||||| ||||| || ||||| || ||||||||| | ||||| ||||| || ||| ||||| |
|
|
| T |
10996811 |
ggaaattcaggtttcgaaaaatttccaaagggacttggatt-atgggtccgaattcgtgaatatgatcaatggatggcggacgaagattttacgcaagtt |
10996909 |
T |
|
| Q |
190 |
ttatctaaaaaacagcagcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggt |
264 |
Q |
| |
|
|||| || ||||||||||| || |||||||| | || ||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
10996910 |
ctatccaagaaacagcagcaggcagtgaaaaagaaagtgttaggaaaagcctcgtataacacccgtgcaaagggt |
10996984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 19936630 - 19936349
Alignment:
| Q |
9 |
agcagagacataagcgaattcaagaacagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcagtccagggaaatccaggttttgaaa |
108 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
19936630 |
agcagaggcaaaagcgaattcaagtgcagcagctaatgagcttactgctgatcaggtgcgtgaagtttcaattcaatccaaggaaatccaggtttcgaaa |
19936531 |
T |
|
| Q |
109 |
aatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagcagc |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
19936530 |
aatgttcaaaatgacttggatttatgggctcgcattcgggagtatgatcaatgtatggccgccgaaggattcacgcaggttttgtctaaaaaacagcagc |
19936431 |
T |
|
| Q |
209 |
aaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttc |
290 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936430 |
aaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggttcaactcccccttctcaatgaatttc |
19936349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 373 - 599
Target Start/End: Original strand, 29924688 - 29924920
Alignment:
| Q |
373 |
agatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa---gtga---tggaactagtaaagttgctgcattg |
466 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| || | ||| | | || |||||||| |
|
|
| T |
29924688 |
agatgaagtggtgatgatttctgttgcttgccttgtcgttttgttcagtttacagaagtatggaacaagtaaagttgggcttgctgtaggacctgcattg |
29924787 |
T |
|
| Q |
467 |
tttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatt |
566 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29924788 |
tttatatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatt |
29924887 |
T |
|
| Q |
567 |
tctttgcaaggaattcaactaaagcatggtatt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
29924888 |
tctttgcaaggaattcaactaaagcatggtatt |
29924920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 29924242 - 29924295
Alignment:
| Q |
321 |
cagtactatcatctgttaacggcttgaaggttggggtagatgcaattcaacaag |
374 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29924242 |
cagtactatcatctgttaatggcttgaaggttggggtagatgcaattcaacaag |
29924295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 474 - 599
Target Start/End: Complemental strand, 15952684 - 15952559
Alignment:
| Q |
474 |
ggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacatctattatttctttgc |
573 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15952684 |
ggttctgttctcttgcgggtaatggtgtatactatcttgtcaaatatgacagcagcgtttttagggcttttaatcctattcacatctattatttctttgc |
15952585 |
T |
|
| Q |
574 |
aaggaattcaactaaagcatggtatt |
599 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15952584 |
aaggaattcaactaaagcatggtatt |
15952559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 334 - 437
Target Start/End: Complemental strand, 15952823 - 15952720
Alignment:
| Q |
334 |
tgttaacggcttgaaggttggggtagatgcaattcaacaagatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtat |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15952823 |
tgttaacggcttgaaggttggggtagatgcaattcgacaagatgaagtggtgatgatttctgttgcttgccttgtcgttttgttcagtttacagaagtat |
15952724 |
T |
|
| Q |
434 |
ggaa |
437 |
Q |
| |
|
|||| |
|
|
| T |
15952723 |
ggaa |
15952720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 106 - 305
Target Start/End: Complemental strand, 2934 - 2738
Alignment:
| Q |
106 |
aaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaaaacagc |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||| |||| ||||| || || |||| |
|
|
| T |
2934 |
aaaaatgtacaaaatgacttggatttatgggctcgcattcgcgagtatgatcaacggatggcaacagaaggcttcacgcaagtgttatccaagaagcagc |
2835 |
T |
|
| Q |
206 |
agcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttctcaatgaatttcctttattggaacatc |
305 |
Q |
| |
|
| ||||||||||||||||| ||| | || ||||||||||| || |||||||| |||||| ||||| ||| |||||||| | ||||||||||||||||| |
|
|
| T |
2834 |
aacaaacattgaaaaagcaagttctgggtaaagcttcgtataaaacccgtgcaaagggt---actcctcctcctcaatgagtgtcctttattggaacatc |
2738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 224 - 352
Alignment:
| Q |
178 |
ttcacgtaagttttatctaaaaaacagcagcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactccccctt |
277 |
Q |
| |
|
|||||| |||| ||||| || || ||||| ||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||| ||| | || |
|
|
| T |
224 |
ttcacgcaagtgttatccaagaagcagcaacaaacattgaaaaagcaagttatgggtaaagcttcgtataacacccgtgcaaagggtaatcctcatcatt |
323 |
T |
|
| Q |
278 |
ctcaatgaatttcctttattggaacatcc |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
324 |
ctcaatgaatgtcctttattggaacatcc |
352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 599
Target Start/End: Original strand, 1636777 - 1636917
Alignment:
| Q |
459 |
ctgcattgtttacatggttctgttctcttgcgggcaatggtgtatacaatcttgtcaaatatgacagtagcgtttttagggcttttaatcctattcacat |
558 |
Q |
| |
|
|||| ||||| | |||||| ||||||||||| || | || ||||||||||| ||||||||||||| || || || ||||| || ||||| ||||| || |
|
|
| T |
1636777 |
ctgctttgttcatatggttttgttctcttgccggtatcgggatatacaatcttctcaaatatgacagaagtgtcttgagggcattcaatcccattcatat |
1636876 |
T |
|
| Q |
559 |
ctattatttctttgcaaggaattcaactaaagcatggtatt |
599 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
1636877 |
ctactatttcttcaagaggaactcaactaaagcatggtatt |
1636917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 1636685 - 1636749
Alignment:
| Q |
373 |
agatgaagtggtgatgatttctattgcttgcgttgtcgttttgttcagtttacaaaagtatggaa |
437 |
Q |
| |
|
||||||||||||||||||||| |||| ||| | | |||||||||||| ||||||||||||||| |
|
|
| T |
1636685 |
agatgaagtggtgatgatttcagttgcctgcctgattgttttgttcagtgtacaaaagtatggaa |
1636749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 26657175 - 26657379
Alignment:
| Q |
100 |
gttttgaaaaatgtgcaaaatgacttggatttatgggctcgcattcgggagtatgatcaacgtatggcaagcgaaggattcacgtaagttttatctaaaa |
199 |
Q |
| |
|
|||| ||| ||||| || ||||| |||||||||| ||| || ||||| || ||||||||||| ||||| ||||| ||||| |||||||||| |||| |
|
|
| T |
26657175 |
gtttcgaagaatgtccagaatgatttggatttataggcacgtattcgtgaatatgatcaacggatggcggatgaaggcttcacacaagttttatccaaaa |
26657274 |
T |
|
| Q |
200 |
aacagcagcaaacattgaaaaagcatgttttagggaaagcttcgtaaaacacccgtgcgaagggttcaactcccccttc-tca--atgaatttcctttat |
296 |
Q |
| |
|
| ||||| ||| || | |||| ||| || ||||| || ||| |||| |||||||| || |||||| | |||| |||| ||| ||||||||||||||| |
|
|
| T |
26657275 |
agcagcaacaagcagttaaaaggcaagtgttaggaaaggctccgtacaacacccgggcaaagggtactcctccatcttcttcatcatgaatttcctttat |
26657374 |
T |
|
| Q |
297 |
tggaa |
301 |
Q |
| |
|
||||| |
|
|
| T |
26657375 |
tggaa |
26657379 |
T |
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