View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_6 (Length: 452)
Name: NF20692_low_6
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 21 - 445
Target Start/End: Complemental strand, 43921305 - 43920881
Alignment:
| Q |
21 |
atagcaacatattaacttgcaatttatttgcactaccaaatccaatcaatattgcttatttactagaatgctctatacatttgactaactaccagtcaac |
120 |
Q |
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| T |
43921305 |
atagcaacatattaacttgcaatttatttgcactaccaaatccaatcaatattgcttatttactagaatgctctatacatttgactaactaccagtcaat |
43921206 |
T |
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| Q |
121 |
gctagtaaaaactactagtctcttaccttattttctaccaaattcccaatgataaatgcaactagtagtttctttgatctacacagtaagtactctcttt |
220 |
Q |
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| T |
43921205 |
gctagtaaaaactactagtctcttaccttattttctaccaaattcccaatgataaatgcaactagtagtttctttgatctacacagtaagtactctcttt |
43921106 |
T |
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| Q |
221 |
cattttacaaatttcatcattttctgcaacttctacaaaatatttttcaacttattagtatgtcaagaccggggaataagatcattcaagccaagctggt |
320 |
Q |
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| T |
43921105 |
cattttacaaatttcatcattttctgcaacttctacaaaatattttgcaacttattagtatgtcaagaccggggaataagatcattcaagccaagctggt |
43921006 |
T |
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| Q |
321 |
aggtatgtcttaccttattactaaattttgtttttgtgttccagataccagtcannnnnnnatgaatatgtacttgatcttcttctatcaagttattatt |
420 |
Q |
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| T |
43921005 |
aggtatgtcttaccttattactaaattttgtttttttgttccagataccagtcatttttttatgaatatgtacttgatcttcttctatcaagttattatt |
43920906 |
T |
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| Q |
421 |
atgttaaaaaatcctacctatgtta |
445 |
Q |
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| T |
43920905 |
atgttaaaaaatcctacctatgtta |
43920881 |
T |
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