View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_7 (Length: 448)
Name: NF20692_low_7
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 17234425 - 17234008
Alignment:
| Q |
13 |
agatatatcattgttttaagtctttcttactcgtcatacttatcttttcacgattaatttatgtattgttggaacacaagagcgtctgaattgaaaataa |
112 |
Q |
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| T |
17234425 |
agatatatcattgtcttaagtctt----actcgtcatacttatcttttcacgattaatttatgtattgttgga--------gcgtctgaattgaaaatat |
17234338 |
T |
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| Q |
113 |
aatttatagagatcaaaattttgaatagtagagtgaaaaattataaagtttcac---gtttagtttacacatatcggctagttttcaacattatataatg |
209 |
Q |
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| T |
17234337 |
aatttatagagatcaaaattttgaatagtagagtgaaaaattataaagtttcacatcgtttagtttacgcatatcggctacttttcaacattatataatg |
17234238 |
T |
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| Q |
210 |
agtactcacatttctttctaaagtacatcaaaactttaggtatttctaagttttctttttcgttaatgttcgatgcgcttgtgagccacttcttcctttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17234237 |
agtactcacatttctttctaaagtacatcaaaactttaggtatttctaagttgtctctttcgttaatgttcgatgcgcttgtgagccacttcttcctttt |
17234138 |
T |
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| Q |
310 |
ctgttataatgtttcgagaaaattttatccttttggttgtcatttttgagaaacgtgttattttgatatttaaagtgatcctaatatcatcgtctctttg |
409 |
Q |
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| T |
17234137 |
ctgttataatatttcgagaaaattttgtccttttggttatcatttttgagagacgtgttattttgatatttaaagtgatcctaatatcatcgtctctttg |
17234038 |
T |
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| Q |
410 |
atacttag-gtggattttttgtctcctttg |
438 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
17234037 |
atacttagagtggattttttgtctcctttg |
17234008 |
T |
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