View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20692_low_9 (Length: 418)
Name: NF20692_low_9
Description: NF20692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20692_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 45985767 - 45986148
Alignment:
| Q |
19 |
agaagaaccatataatagaatagaatgtgaaacctcagctaactaaccctctaaaaccgctaagaacagttgtaacacatgtttcacaaaggaaagatgc |
118 |
Q |
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| T |
45985767 |
agaagaaccatataatagaatagaatgtgaaacctcagctaactaaccctctaaaaccgctaagaacagttgtaacacatgattcacaaaggaaagatgc |
45985866 |
T |
|
| Q |
119 |
acactcctaacagaagctaccactaaattgcagagaacataagattctcaaatactgattcatgtcttgtctattctattggagaaaatacaaattttct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45985867 |
acactcctaacagaagctaccactaaattgcagagaacataagattctcaaatactgattcatgtcttgtctattctat-ggagaaaatacaaattttct |
45985965 |
T |
|
| Q |
219 |
tccaagtttctatgtacacctaggcagtatgggaacaaagaactctagttctgtaaccataagatggctgaagctaattctggatcgtctcctaagaagt |
318 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |
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| T |
45985966 |
tccaagtttctatgtacacctaggaagtatgggaacaaagaactctagttctgtaaccataagatggttgaagccaattctggatcatctcctaagaagt |
45986065 |
T |
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| Q |
319 |
taacacccaatgatcccctcccaaatccacaaccaggataacttacttatcccaataactataacacatttggcatcaattca |
401 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45986066 |
taacacccgatgatcccctcccaaatccacaaccaggataacttacttatcccaataactataacacatttggcatcaattca |
45986148 |
T |
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