View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20693_high_2 (Length: 443)
Name: NF20693_high_2
Description: NF20693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20693_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 32629767 - 32629342
Alignment:
| Q |
16 |
aaaccaaactgggatctgggagatacgaactgtaatatctaaaatacaggtacttcaaaatgaagtgctcgcagcatagatcccaagtatggatgcaaat |
115 |
Q |
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| T |
32629767 |
aaaccgaactgggatctgggagatacgaactgtaatatctaaaatacaggtacttcaaaatgaagtactcgcatcatagatcccaagtatggatgcaaat |
32629668 |
T |
|
| Q |
116 |
acggttaggatacgtttatgatatgtccgaaacaaaatttgaatggctaacactccaaaatctggtaaatataaaaccaaaaacaggggaatagtgtatc |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629667 |
acggttaggatacgtttatggtatgtccgaaacaaaatttgaatggctaacactccaaaatctggtaaatataaaaccaaaaacaggggaatagtgtatc |
32629568 |
T |
|
| Q |
216 |
aagctatctttttatgctaatttacttt------tag-acacggccaaggttctaccacaacttaaagacttttagaactaattccaagttcgcaacgag |
308 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629567 |
aagctatctttttatgctaatttactttgaccactagtacacggccaaggttttaccacaacttaaagacttttagaactaattccaagttcgcaacgag |
32629468 |
T |
|
| Q |
309 |
acatctgatttagtcacgagtgagtaaacagcctg-caattgaggactacactttgcaggataattacataacaaacgtctctgaaagttacgtctgtat |
407 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32629467 |
acatctgatttagtcacgagtgagtaaacagcctgacaattgaggactacactttgcaggataattacataacaaacttctctgaaagttacgtctgtat |
32629368 |
T |
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| Q |
408 |
agatcaagctatttgattgaagaata |
433 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32629367 |
agatcaagctatttgattgaagaata |
32629342 |
T |
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