View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20693_low_1 (Length: 954)
Name: NF20693_low_1
Description: NF20693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20693_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 350 - 935
Target Start/End: Original strand, 54080618 - 54081222
Alignment:
| Q |
350 |
aagagcaaaaacaccatgtcatattatcatgcatatagtcaataataaacagcctttcatcctccactatggttagtggccatcatatgagtcgacatat |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54080618 |
aagagcaaaaacaccatgtcatattatcatgcatatagtcaataataaacagcctttcatcctccactatggttagtggccatcatatgagtcgacatat |
54080717 |
T |
|
| Q |
450 |
tgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatatga |
549 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54080718 |
tgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatatga |
54080817 |
T |
|
| Q |
550 |
tttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaacaagagcattcagcagctataa--atacttcaaaacctcttc |
647 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |
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| T |
54080818 |
tttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaactagagcattcagcggctataaatatacttcaaaacctcttc |
54080917 |
T |
|
| Q |
648 |
agagtatcaacaacaaatacactgcataccctctaa-----------------ataataaatattatactatattgttcgatatccttagtttacctttg |
730 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54080918 |
agagtatcaacaacaaatacactgcataccctctaaagtttgttcaattctatataataaatattatactatattgttcgatatccttagtttacctttg |
54081017 |
T |
|
| Q |
731 |
cttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaatcagaaagca |
830 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54081018 |
cttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcaattattgaatcagaaagca |
54081117 |
T |
|
| Q |
831 |
gagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggctctggagc |
930 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54081118 |
gagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggctctggagc |
54081217 |
T |
|
| Q |
931 |
cggag |
935 |
Q |
| |
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||||| |
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| T |
54081218 |
cggag |
54081222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 54080266 - 54080584
Alignment:
| Q |
1 |
taacaaatgaatccaaaagaagagttcagaaatgatcaatgatcccccactgagtaagtcactctcagaagggtaaatataatagcattcttgaaccatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54080266 |
taacaaatgaatccaaaagaagagttcagaaatgatcaatgatcccctactgagtaagtcactctcagaagggtaaatataatagcattcttgaaccttg |
54080365 |
T |
|
| Q |
101 |
tataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatataccactattaccttatacaaaact |
200 |
Q |
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| T |
54080366 |
tataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatataccactattaccttatacaaaact |
54080465 |
T |
|
| Q |
201 |
tagggaactgacagtggcaccaccactattggcaaaacaaaaagtagactttctggtgcacagacaaaatccctacctcacctataaccatgagatgagc |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54080466 |
taggagactgacagtggcaccaccactattggcaaaacaaaaagtagactttctggtgcacagacaaaatccctacctcacctataaccatgagatgagc |
54080565 |
T |
|
| Q |
301 |
tgttcacgcaaaggatcag |
319 |
Q |
| |
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||| ||||||||||||||| |
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| T |
54080566 |
tgtccacgcaaaggatcag |
54080584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 760 - 935
Target Start/End: Original strand, 54084426 - 54084601
Alignment:
| Q |
760 |
aatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaatcagaaagcagagtggctaggaaggatttgggtttggac |
859 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
54084426 |
aatggctgcaccttggtcatgttgtttacttgcggtgctcgttttgatgtcagttattgaatcagaaagcagagtagcaaggaaggatttgggtttggac |
54084525 |
T |
|
| Q |
860 |
cttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggctctggagccggag |
935 |
Q |
| |
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|| ||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
54084526 |
ctcggtgggttgggaattggacttggtgcaggagtaggcttgggaattggaggtggcagtggctctggagccggag |
54084601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 384 - 605
Target Start/End: Original strand, 54084009 - 54084228
Alignment:
| Q |
384 |
atagtcaataataaacagcctttcatcctccactatggttagtggccatcatatgagtcgacatattgtattggaacatgtcataaatcatgcgaatgtg |
483 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||||||| ||||||||| ||| |||||||| ||||| |||||||||||| |||| | |
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| T |
54084009 |
atagtcaacaataaacaacctttcatcctccactaagtagagtggccatcgtatgagtcggcat--tgtattggcacatgccataaatcatgccaatgag |
54084106 |
T |
|
| Q |
484 |
catgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatatgatttcccccactttctagcctcaaacttaaaataa |
583 |
Q |
| |
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|| |||||||| | ||||||||||||||||| | ||||||||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||||||| |
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| T |
54084107 |
caagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatatgatctcctctactttctagcctcaaacttaaaataa |
54084206 |
T |
|
| Q |
584 |
tcattccacatgttcacaccaa |
605 |
Q |
| |
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||||||| ||| |||||||||| |
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| T |
54084207 |
tcattccgcattttcacaccaa |
54084228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 54083555 - 54083669
Alignment:
| Q |
79 |
ataatagcattcttgaaccatgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatatac |
178 |
Q |
| |
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|||| |||||||||||||| | |||||||||| |||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| || |
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| T |
54083555 |
ataaaagcattcttgaaccttccataagaatgagcacc-agatatagtaatctaggtgcaaattgatcatcatgcaacaaaaagttaatgatat----ac |
54083649 |
T |
|
| Q |
179 |
cactattaccttatacaaaa |
198 |
Q |
| |
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||||| || ||||||||||| |
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|
| T |
54083650 |
cactactagcttatacaaaa |
54083669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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