View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20693_low_3 (Length: 250)
Name: NF20693_low_3
Description: NF20693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20693_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 36528718 - 36528959
Alignment:
| Q |
9 |
agcagagaccaagtagtagtaattggagattatcaaatagattgtgtttgtttgactaaaaagttgagaaagaaattttgttatgttaatcttcttagtg |
108 |
Q |
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| T |
36528718 |
agcagagaccaagtagtagtaattggagattatcaaatagactgtgtttgtttgactaaaaagttgagaaagaaattttgttatgttaatcttttaagtg |
36528817 |
T |
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| Q |
109 |
ttgaagatgcaaacgtttctgctagtaatgaaggtggtgaagctaaagaggaagaaaaagatgttaaagtaactataaattcaacagaaaatttatcggt |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
36528818 |
ttgaagatgcaaacgtttctgctagttatgaaggtgatgaagctaaagaggaagaaaaagatgttgaagtaaccataaattcaacagaaaattcatcggt |
36528917 |
T |
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| Q |
209 |
tgtttgtaattgtgagaaaaattatcctccaccttgtccctt |
250 |
Q |
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| T |
36528918 |
tgtttgtaattgtgagaaaaattatcctccaccttgtccctt |
36528959 |
T |
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