View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20693_low_4 (Length: 244)
Name: NF20693_low_4
Description: NF20693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20693_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 2366354 - 2366143
Alignment:
| Q |
16 |
caaaggagtagtgaacttatattagagcatgcagaaaatatacctgtcctcctggagataaattatcgacaatagcgccaaccaaaggcttctgcagacc |
115 |
Q |
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| T |
2366354 |
caaaggagtagt-aacttatattagagcatgcagaaaatatacatgtccccctggagataaattatcgacaatagcaccaaccaaaggcttctgcagacc |
2366256 |
T |
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| Q |
116 |
tcttcttttataatgttttttcttgaaatgagggtctggatactgcatgtttttcgatagacaaatttagtaatttagtggttacgttagttttcacggt |
215 |
Q |
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| T |
2366255 |
tcttcttttatgatgttttttcttgaaatgagggtctggatactgcatgtttttcgatagacaaatttagtaacttagtgattacgttagttttcacggt |
2366156 |
T |
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| Q |
216 |
ttgaaccctaaac |
228 |
Q |
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| T |
2366155 |
ttgaaccctaaac |
2366143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 2362171 - 2362040
Alignment:
| Q |
33 |
tatattagagcatgcagaaaatatacctgtcctcctggagataaattatcgacaatagcgccaaccaaaggcttctgcagacctcttcttttataatgtt |
132 |
Q |
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| T |
2362171 |
tatattagagcatgcagaaaatatacctgtccccctggagataaattatctacaatagtgccaaccaaaggcttttgcaaaactcttcttttatgatatt |
2362072 |
T |
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| Q |
133 |
ttttcttgaaatgagggtctggatactgcatg |
164 |
Q |
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| T |
2362071 |
ttttctttaaatgagggtctggacactgcatg |
2362040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 2354180 - 2354058
Alignment:
| Q |
41 |
agcatgcagaaaatatacctgtcctcctggagataaattatcgacaatagcgccaaccaaaggcttctgcagacctcttcttttataatgttttttcttg |
140 |
Q |
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||||| |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||| | | ||||| |||| ||||||||||||| |
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| T |
2354180 |
agcatacagaaaatatacctgtcccccaggagataaattatctacaatagcaccaaccaaaggcttctgcaaaacccttctcttatgatgttttttcttg |
2354081 |
T |
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| Q |
141 |
aaatgagggtctggatactgcat |
163 |
Q |
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| T |
2354080 |
aaatgagggtctggacactgcat |
2354058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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