View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20694_high_2 (Length: 344)
Name: NF20694_high_2
Description: NF20694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20694_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 4202068 - 4202382
Alignment:
| Q |
14 |
agagaaaccctttgaaaacatggccactaatatgaactgtagccaagtaagcaaattcatcttcaccattgccaatagcagttactctatgacatctgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
4202068 |
agagaaaccctttgaaaacatggccactaatatgaactgtggccaagtaagcaaattcatcttcaccattgccaatagcagttactctatggcacctgaa |
4202167 |
T |
|
| Q |
114 |
tacagctggtgcattaacatgacctggtaaaccctctttgaaacctgcatctgcaattcaacagaattttcacttcaacaacgttaatttcagttgtaat |
213 |
Q |
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| T |
4202168 |
tacagctggtgcattaacatgacctggtaaaccctctttgaaacctgcatctgcaattcaacagaattttcacttcaacaacgttaatttcagttgtaat |
4202267 |
T |
|
| Q |
214 |
aatttcatgtggtcctcaaagacacacaaattactctataaccacgcattcacatagtcatacgatattattaatttgattttaattagacttttgcatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4202268 |
aatttcatgtggtcctcaaagacacacaaattactctataaccacgcattcacatagtcatacgatattattcatttgattttaattagacttttgcatt |
4202367 |
T |
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| Q |
314 |
ctaattttgtaaaac |
328 |
Q |
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||||||||||||||| |
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| T |
4202368 |
ctaattttgtaaaac |
4202382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 14513779 - 14513689
Alignment:
| Q |
14 |
agagaaaccctttgaaaacatggccactaatatgaactgtagccaagtaagcaaattcatcttcaccattgccaatagcagttactctatg |
104 |
Q |
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||||||||||||| || |||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
14513779 |
agagaaaccctttaaatacatggccactaatattcacagtggccaagtaagcaagttcatcttcaccattgccaatagcagaaactctatg |
14513689 |
T |
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