View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20694_low_4 (Length: 250)
Name: NF20694_low_4
Description: NF20694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20694_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 4201848 - 4202083
Alignment:
| Q |
15 |
tataacaaatatggtacaaaatgtaactttaaatcaaatcaaagtcaaattatgtacctgataatcaatcttcatggctagctagcagaagcagggtaag |
114 |
Q |
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| T |
4201848 |
tataacaaatatggtacaaaatgtaactttaaatcaaatcaaagtcaaattatgtacctgataatcaatcttcatggctagctagcagaagcagggtaag |
4201947 |
T |
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| Q |
115 |
cattattgttgggaacaccaattgcagaagaacattcaccattttttccactacaattatttcccaattgaagttctgaaacacaaggcattggattttt |
214 |
Q |
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| T |
4201948 |
cattattgttgggaacaccaattgcagaagaacattcaccattttttccactacaattatttcccaattgaagttctgaaacacaaggcattggattttt |
4202047 |
T |
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| Q |
215 |
cccatcaacaccatgatcatagagaaaccctttgaa |
250 |
Q |
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| T |
4202048 |
cccatcaacaccatgatcatagagaaaccctttgaa |
4202083 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 14513858 - 14513767
Alignment:
| Q |
159 |
tttccactacaattatttcccaattgaagttctgaaacacaaggcattgg---atttttcccatcaacaccatgatcatagagaaacccttt |
247 |
Q |
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| T |
14513858 |
tttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaacccttt |
14513767 |
T |
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