View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_high_12 (Length: 339)
Name: NF20695_high_12
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 13714233 - 13714555
Alignment:
| Q |
1 |
ttggtagtgttttagtcatcatattatagccattattatcagtatgaactttagctaactctaacaacatagcatctataacgccatgtgttcaatcata |
100 |
Q |
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| T |
13714233 |
ttggtagtgttttagtcatcatattatagccattattatcagtatgaaatttagctaactctaacaacatagcatctataacgccatgtattcaatcata |
13714332 |
T |
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| Q |
101 |
tctcgaatcaatgtgtttgaacctattacaagaagttggattctcaccaagatgaatagcactttgactattagcaaatatttgttcttcacccttggga |
200 |
Q |
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| T |
13714333 |
tctcgaatcaatgtgtttgaacctattacaaaaagttggattcttaccaagatgaatagcactttgactattaacaaatatttgttcttcacccttggga |
13714432 |
T |
|
| Q |
201 |
gttgaactttcaatggagatgggtaatgagctaataggtctagcccttagtgcgggtttttagactactccaaagaacgtctagtatagaaggatgaact |
300 |
Q |
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| T |
13714433 |
gttgaactttcaatggagatgggtaatgagctaataggtctagcccttagtgcgggtttctagactacttcaaaggacgtctagtatagaaggatgaact |
13714532 |
T |
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| Q |
301 |
agtacataagaagacataaaact |
323 |
Q |
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| T |
13714533 |
agtacttaagaagacataaaact |
13714555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 6856818 - 6856753
Alignment:
| Q |
11 |
tttagtcatcatattatagccattattatcagtatgaactttagctaactctaacaacatagcatc |
76 |
Q |
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| T |
6856818 |
tttagtcatcatatcataactactataatcaatatgaactttagataactccaacaacttagcatc |
6856753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 1626890 - 1626829
Alignment:
| Q |
255 |
ggtttttagactactccaaagaacgtctagtatagaaggatgaactagtacataagaagaca |
316 |
Q |
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||||| |||||||||||||| | |||||||| | |||| |||||||| ||||||| |||||| |
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| T |
1626890 |
ggtttctagactactccaaaaagcgtctagtgtggaagcatgaactattacataaaaagaca |
1626829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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