View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_high_14 (Length: 315)
Name: NF20695_high_14
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 40381929 - 40381641
Alignment:
| Q |
11 |
cagagaaaattacagttgcgaatagaggaacaaggaaggaagttgcaaatgatgtttgaccaacatcagaagacaagtagtggtggccaattgaacactc |
110 |
Q |
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| T |
40381929 |
cagagaaaattacagttgcgaatagaggaataaggaaggaagttgaagatgatgtttgaccaacatcagaagacaagtagtggtggccaattgaacactc |
40381830 |
T |
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| Q |
111 |
aaaatttggacaatacagcaaacaatgatataccaataagtcctaaagatattgaggttaccatttttgaagggtctgattctcaatgctcataactgac |
210 |
Q |
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| T |
40381829 |
aaaatttggacaatacagcaaacaatgatataccaataagtcctaaagatattgaggttaccatttttgaagggtctgattctcaatgctcataactgac |
40381730 |
T |
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| Q |
211 |
agtaaaccaaaccatagatacaattttttaatgggaattaaattagtcttgttgtttcacaagtccaaattcagtaaataagtatatat |
299 |
Q |
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| T |
40381729 |
agtaaaccaaaccatagatacaattttttaatgggaattaaattagtcttgttgtttcacaagtccgaattcagtaaataagtatatat |
40381641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 22812490 - 22812218
Alignment:
| Q |
15 |
gaaaattacagttgcgaatagaggaacaaggaaggaagttgcaaatgatgtttgaccaacatcagaagacaagtagtggtggccaattgaacactcaaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||| |||||||||| |||| | ||||||||||||||||||| |
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| T |
22812490 |
gaaaattacagttgcgaatagaggaacaaggaaagcagttgaagatgatgtttgaccaacaacagaagacaaatagtacttgccaattgaacactcaaaa |
22812391 |
T |
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| Q |
115 |
tttggacaatacagcaaacaatgatataccaataagtcctaaagatattgaggttaccatttttgaagggtctgattctcaatgctcataactgacagta |
214 |
Q |
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||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |
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| T |
22812390 |
tttggacaatacaccaaacaatgatacaccaattagtcctaaagatattgaggttaccatttttgaagggtctcattctcaatactcataactgacagaa |
22812291 |
T |
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| Q |
215 |
aaccaaaccatagatacaattttttaatgggaattaaattagtcttgttgtttcacaagtccaaattcagtaaataa |
291 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
22812290 |
aaccaaacc----atacaattttgtaatgggaattaaattagtcttgttgttttacaaatccaaattcagtaaataa |
22812218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 22809618 - 22809496
Alignment:
| Q |
62 |
atgtttgaccaacatcagaagacaagtagtggtggccaattgaacactcaaaatttggacaatacagcaaacaatgatataccaataagtcctaaagata |
161 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||| |||| |||||||||||| ||||| || |||||||||| |
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| T |
22809618 |
atgtttgaccaacagcagaagagaagtagtagtggccaaatgaacactcggaatttggacattacatcaaacaatgataaaccaaacaggcctaaagata |
22809519 |
T |
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| Q |
162 |
ttgaggttaccatttttgaaggg |
184 |
Q |
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|||| || | |||||||||||| |
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| T |
22809518 |
ctgagatttcaatttttgaaggg |
22809496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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