View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_high_16 (Length: 296)
Name: NF20695_high_16
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 5230661 - 5230928
Alignment:
| Q |
19 |
ttgcaatggatattactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaattcatgctcattcaa |
118 |
Q |
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| T |
5230661 |
ttgcaatggatattactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaagtcatgctcattcaa |
5230760 |
T |
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| Q |
119 |
atgctaccattaatttaaagctataaatatttcatttgggatcatatgtttaatttttatcttacctattctataggtacactgatttcggtggtgctat |
218 |
Q |
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| T |
5230761 |
atgctaccattaatttaaagctataaatatttcatttgggatcatatgtttaatttttatgttacctattctgtaggtacactgatttcggtggtgctat |
5230860 |
T |
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| Q |
219 |
atctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctcctttg |
286 |
Q |
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| T |
5230861 |
atctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctcctttg |
5230928 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 17126254 - 17126333
Alignment:
| Q |
23 |
aatggatattactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggta |
102 |
Q |
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| T |
17126254 |
aatggatattactgtgaaaacttctctcccaacaagaactacaaaccaaaaatgtggacagaaaattggactggctggta |
17126333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 17126418 - 17126506
Alignment:
| Q |
193 |
aggtacactgatttcggtggtgctatatctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctc |
281 |
Q |
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| T |
17126418 |
aggtacactgattttggtactgctgtcccttatagaccagcagaagacttggcattctcggttgccagattcgtacagaatcgcggctc |
17126506 |
T |
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