View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_high_2 (Length: 598)
Name: NF20695_high_2
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 52422112 - 52422700
Alignment:
| Q |
1 |
gactctcaaattgcagcaaagaaacaaaagctttcttctggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctctagaccataatg |
100 |
Q |
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| T |
52422112 |
gactctcaaattgcagcaaagaaacaaaagctttcttctggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctctagaccataatg |
52422211 |
T |
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| Q |
101 |
ctttgggacttgtccggcaatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggccgaaaacactctgcaatgcttgcgg |
200 |
Q |
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| T |
52422212 |
ctttgggacttgtccggcaatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggccgaaaacactctgcaatgcttgcgg |
52422311 |
T |
|
| Q |
201 |
tgttcggtacaagtcaggccgactctgccctgaataccggcctgcggctagctcaactttttctccggatcttcactctaactcacataagaagatcctt |
300 |
Q |
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| T |
52422312 |
tgttcggtacaagtcaggccgactctgccctgaataccggcctgcggctagctcaactttttctccggatcttcactctaactcacataagaagatcctt |
52422411 |
T |
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| Q |
301 |
gaaatgagagtgatgagacgcaaggataataagaattctggtattcttgccttggaatacatgtgaagggagaatgatccaagttatggatatttctctc |
400 |
Q |
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| T |
52422412 |
gaaatgagagtgatgagacgcaaggataataagaattctggtattcttgccttggaatacatgtgaagggagaatgatccaagttatggatatttctctc |
52422511 |
T |
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| Q |
401 |
tcgtctctttatctagtgtcgcatcttagg-nnnnnnnnaaagaattttacttcttttggtaaacaagtttgggttttatgtgtagtaattttagttcag |
499 |
Q |
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| T |
52422512 |
tcgtctctttatctagtgtcgcgtcttaggtttttttttaaagaattttacttcttttggtaaacaagtttgggttttatgtgtagtaattttagttcag |
52422611 |
T |
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| Q |
500 |
ttaggtaatcaggagtttgtgtcacatatgtcttaggtattcttgcatgcaagtattaatttcttttcgtattgcttatattctctgtg |
588 |
Q |
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| T |
52422612 |
ttaggtaatcaggagtttgtgtcacgtatgtcttaggtattcttgcatgcaagtattaatttcttttcgtattgcttatattctctgtg |
52422700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 119 - 309
Target Start/End: Original strand, 42714493 - 42714683
Alignment:
| Q |
119 |
aatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggccgaaaacactctgcaatgcttgcggtgttcggtacaagtcagg |
218 |
Q |
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| T |
42714493 |
aatgcatgcattgtgagataaccaagactccacaatggagggcaggtccaatggggccaaaaacactctgcaatgcttgcggtgttcggtacaagtctgg |
42714592 |
T |
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| Q |
219 |
ccgactctgccctgaataccggcctgcggctagctcaactttttctccggatcttcactctaactcacataagaagatccttgaaatgaga |
309 |
Q |
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| T |
42714593 |
ccgacttttccctgaataccggcctgctgctagtccaacgttttgtccagctgtgcactccaattcgcacaaaaaggtccttgaaatgaga |
42714683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 42714381 - 42714450
Alignment:
| Q |
19 |
aagaaacaaaagctttcttctggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctc |
88 |
Q |
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| T |
42714381 |
aagaaaccaaagctctcttctggagaaaccaagaagaaaaagaaaatcaaggcaccacttcctactgctc |
42714450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 24480367 - 24480286
Alignment:
| Q |
95 |
ataatgctttgggacttgtccggcaatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggcc |
176 |
Q |
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| T |
24480367 |
ataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagactccacaatggaggatagggtcagaggggcc |
24480286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 40377598 - 40377534
Alignment:
| Q |
178 |
aaaacactctgcaatgcttgcggtgttcggtacaagtcaggccgactctgccctgaataccggcc |
242 |
Q |
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| T |
40377598 |
aaaacgctctgcaatgcttgtggtgttcggtacaggtccggccgcctctatcctgaataccggcc |
40377534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 14150989 - 14150881
Alignment:
| Q |
5 |
ctcaaattgcagcaaagaaacaaaagctttcttctggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctc---tagaccataatgc |
101 |
Q |
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| T |
14150989 |
ctcaaattgtagacaagaaacaaaagctttcttgtggagagtcaaaaaagaa-aataaaacaaaggcaccacttattgctgctccaggagaccataatgc |
14150891 |
T |
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| Q |
102 |
tttgggactt |
111 |
Q |
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||||| |||| |
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| T |
14150890 |
tttggtactt |
14150881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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