View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20695_high_22 (Length: 254)
Name: NF20695_high_22
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 47211935 - 47211705
Alignment:
| Q |
19 |
atgtttcacctctttagcaacacgacttgcttctactaactctaagaactcgggttcaatgttgtccgtgccacgaatctttctcagaacagcttttcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47211935 |
atgtttcacctctttagcaacacgacttgcttctactaactctaagaactcgggttcaatgttgtccgtgccacgaatctttctcagaacagcttttcct |
47211836 |
T |
|
| Q |
119 |
ttgtccaagtgaccacgttcaatgagactatttggggtgtccactaccaagtaagcccctaaagtgaggagtaatgctgggatacctcccaatcccagag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47211835 |
ttgtccaagtgaccacgttcaatgagactatttggggtgtccactaccaagtaagcccctaaagtgaggagtaatgctgggatacctcccaatcccagag |
47211736 |
T |
|
| Q |
219 |
atatcctccaaccccaatgacctttgcttct |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
47211735 |
atatcctccaaccccaatgacctttgattct |
47211705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 749158 - 749299
Alignment:
| Q |
26 |
acctctttagcaacacgacttgcttctactaa-ctctaagaactcgggttcaatgttgtccgtgccacgaatctttctcagaacagcttttcctttgtcc |
124 |
Q |
| |
|
||||||||||||||||||||||| || || || ||| ||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||| || |
|
|
| T |
749158 |
acctctttagcaacacgacttgcctc-acaaagctccaagaactcgggttcaatgttgtcagtgccacgaatctttttaagtacagcttttccttcttca |
749256 |
T |
|
| Q |
125 |
aagtgaccacgttcaatgagactatttggggtgtccactacca |
167 |
Q |
| |
|
| | ||||||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
749257 |
aggcgaccacgctcaatgagactgttgggggtgtccacaacca |
749299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University