View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20695_high_27 (Length: 246)

Name: NF20695_high_27
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20695_high_27
NF20695_high_27
[»] chr5 (3 HSPs)
chr5 (118-238)||(14506079-14506199)
chr5 (15-52)||(14506043-14506080)
chr5 (58-102)||(38015916-38015960)
[»] chr8 (1 HSPs)
chr8 (58-115)||(23141766-23141823)
[»] chr2 (2 HSPs)
chr2 (58-115)||(3395423-3395480)
chr2 (58-102)||(36727617-36727661)
[»] chr4 (1 HSPs)
chr4 (58-102)||(13228751-13228795)
[»] chr6 (1 HSPs)
chr6 (58-115)||(1599741-1599798)
[»] chr3 (1 HSPs)
chr3 (58-115)||(50331929-50331986)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 14506079 - 14506199
Alignment:
Q  118 ataaaaatatgatatcaaaattcgcttgcggttgatcttaattcaatgcgatgatttaccttaannnnnnngactccccggaattcccaacacaaattct 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||       ||||||||| |||||||||||||||||||    
T  14506079 ataaaaatatgatatcaaaattcgcttacggttgatcttaattcaatgcgatgatttacccaaatttttttgactccccgaaattcccaacacaaattct 14506178  T
Q  218 ttgactataagtaaaaatatt 238  Q
    |||||||||||||||| ||||    
T  14506179 ttgactataagtaaaattatt 14506199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 14506043 - 14506080
Alignment:
Q  15 taatatgttaaatgtgagttagaaattgaatatttgat 52  Q
    |||| |||||||||||||||||||||||||||||||||    
T  14506043 taatgtgttaaatgtgagttagaaattgaatatttgat 14506080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 38015960 - 38015916
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaat 102  Q
    ||||||||| || ||||||||| |||||||||| |||||||||||    
T  38015960 gtagatgttgagcaacatataagtgagatgactcatatatctaat 38015916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 23141823 - 23141766
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 115  Q
    ||||||||| ||||||||||||||||||||||| || |||||||| | | ||||||||    
T  23141823 gtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagatttt 23141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 3395480 - 3395423
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 115  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||| | | ||||||||    
T  3395480 gtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaagatttt 3395423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 36727661 - 36727617
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaat 102  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||    
T  36727661 gtagatgttaagaaacatatatgtgagatgactaatatagctaat 36727617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 13228751 - 13228795
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaat 102  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||    
T  13228751 gtagatgttgagaaacatataagtgagatgactcatatatctaat 13228795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 1599741 - 1599798
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 115  Q
    ||||||||| |||||||||||| |||||||||| || |||||||| | | ||||||||    
T  1599741 gtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagatttt 1599798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 50331986 - 50331929
Alignment:
Q  58 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 115  Q
    ||||||||| |||||||||||| |||||||||| || |||||||| | | ||||||||    
T  50331986 gtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagatttt 50331929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University