View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20695_high_30 (Length: 237)

Name: NF20695_high_30
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20695_high_30
NF20695_high_30
[»] chr5 (3 HSPs)
chr5 (136-221)||(37269029-37269114)
chr5 (1-86)||(37268894-37268979)
chr5 (189-220)||(33757582-33757613)
[»] chr6 (1 HSPs)
chr6 (7-78)||(9307264-9307335)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 37269029 - 37269114
Alignment:
Q  136 cataccggttcttgtaacaaaaaactattataaatgttgaagaaatagaattatttaacatcaaatattattttgactaacgaaac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37269029 cataccggttcttgtaacaaaaaactattataaatgttgaagaaatagaattatttaacatcaaatattattttgactaacgaaac 37269114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37268894 - 37268979
Alignment:
Q  1 aatgagtagttataatagtctcgaaatgtatcaaaattttaaagtaattcttaactgtgtactccgttaatcaaaatagacattca 86  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37268894 aatgagtagtcataatagtctccaaatgtatcaaaattttaaagtaattcttaactgtgtactccgttaatcaaaatagacattca 37268979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 33757582 - 33757613
Alignment:
Q  189 tttaacatcaaatattattttgactaacgaaa 220  Q
    ||||||||||||||||||||||||||||||||    
T  33757582 tttaacatcaaatattattttgactaacgaaa 33757613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 9307264 - 9307335
Alignment:
Q  7 tagttataatagtctcgaaatgtatcaaaattttaaagtaattcttaactgtgtactccgttaatcaaaata 78  Q
    |||| ||||||||||| |||||||||||||||||||| || || || | | || ||| ||||||||||||||    
T  9307264 tagtgataatagtctctaaatgtatcaaaattttaaaatagttttttattatgcacttcgttaatcaaaata 9307335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University