View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_high_8 (Length: 402)
Name: NF20695_high_8
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 14505197 - 14504842
Alignment:
| Q |
1 |
tcatcatttgtaataaacaaagacccacgttcttctctgacaaaatgtgcaatcaatcatgcatatggaaacctattcagctgtaacatgcatgtctata |
100 |
Q |
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| T |
14505197 |
tcatcatttgtaataaacaaagacccacgttcttctctgacaaaatgtgtaatcaatcatgcatatagaaacctattcagctgtaacatgcatgtccata |
14505098 |
T |
|
| Q |
101 |
ttccgcagttatacaagaaaatgcatctaaattttgcctttaattaatttccacaactatgcattaaatagaggcactttcccacaataggcttatccac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14505097 |
ttccgcagttatacaagaaaatgcatctaaatattgcctttaattaatttccacaactatgcattaaatagaggcactttcccacaataggcttatccac |
14504998 |
T |
|
| Q |
201 |
ccttcagccttcacgcatgctctctttacctattgacaattgattaattccacaattgtcttcaaaattcact----actatagttatagtatacacann |
296 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
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| T |
14504997 |
ccttcagccttcacgcatgcactctttacctattgacaattgattaattccacaattgtcttcaaaattcactatagactatagttatatta-----att |
14504903 |
T |
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| Q |
297 |
nnnnnatgttcatctaattgtgaactactacatcattctgttaagttttagcaaattttcc |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14504902 |
tttttatgttcatctaattgtgaactactacatcattctgttaaattttagcaaattttcc |
14504842 |
T |
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