View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_low_10 (Length: 377)
Name: NF20695_low_10
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 1161685 - 1161820
Alignment:
| Q |
111 |
gtaagttagaagaagaaaaacaaagaccaaatgcagtcaagatacatattttgcagtctagcatcaactcctaattta-tcaaatcatagttaatagctc |
209 |
Q |
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| T |
1161685 |
gtaagttagaagaagaaaaacaaagagcaaatgaagtcaagaaacatatttcccagtcaaacatcaactcctaatttagttaaaacaaaattaatagctt |
1161784 |
T |
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| Q |
210 |
atttacctctcattgttggtgtcaaagtgcttcatt |
245 |
Q |
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| T |
1161785 |
attttcctctcaccgttggtgtcatattgcttcatt |
1161820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 35902522 - 35902391
Alignment:
| Q |
110 |
ggtaagttagaagaagaaaaacaaagaccaaatgcagtcaagatacatattttgcagtctagcatcaactcctaattta-tcaaatcatagttaatagct |
208 |
Q |
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| T |
35902522 |
ggtaagttggaagaagaaaaacaaagaccaaatagagtcgagatacata-tttgcagtcaagcatcagctccaaatctagtcaaaaca----taatagct |
35902428 |
T |
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| Q |
209 |
catttacctctcattgttggtgtcaaagtgcttcatt |
245 |
Q |
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| T |
35902427 |
catttacatctcattgttggtgtcatagtgcttcatt |
35902391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 35241266 - 35241372
Alignment:
| Q |
243 |
attagagtatatagcaatcttaaaattgaaagtagactaaatatagggaaattacaattgacta-ttttttcctgataacattaagttccataatctgga |
341 |
Q |
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| T |
35241266 |
attagagtatataacaatcttaaaattggaagtaagcaaagtatagggaaattacagtcgactatttttttcttgattacattaaatcccataatctgaa |
35241365 |
T |
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| Q |
342 |
tttggta |
348 |
Q |
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||||||| |
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| T |
35241366 |
tttggta |
35241372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 24820808 - 24820764
Alignment:
| Q |
201 |
taatagctcatttacctctcattgttggtgtcaaagtgcttcatt |
245 |
Q |
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| T |
24820808 |
taatagctcatttacctctcattgttggtgtcaaagtgcttcatt |
24820764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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