View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20695_low_18 (Length: 282)

Name: NF20695_low_18
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20695_low_18
NF20695_low_18
[»] chr8 (4 HSPs)
chr8 (62-265)||(37244771-37244973)
chr8 (62-164)||(23690200-23690298)
chr8 (62-100)||(7243829-7243867)
chr8 (62-102)||(30467177-30467217)
[»] chr4 (2 HSPs)
chr4 (10-67)||(42756432-42756489)
chr4 (62-100)||(5472699-5472737)
[»] chr1 (4 HSPs)
chr1 (62-164)||(15536270-15536368)
chr1 (62-101)||(22545164-22545203)
chr1 (62-102)||(23930398-23930438)
chr1 (62-102)||(40032279-40032319)
[»] chr6 (3 HSPs)
chr6 (16-67)||(24360625-24360676)
chr6 (62-99)||(2158456-2158493)
chr6 (62-102)||(32429526-32429566)
[»] chr2 (1 HSPs)
chr2 (16-67)||(20443112-20443163)
[»] chr7 (2 HSPs)
chr7 (62-102)||(37526423-37526463)
chr7 (62-102)||(45358057-45358097)
[»] scaffold1315 (1 HSPs)
scaffold1315 (16-59)||(1675-1718)
[»] scaffold1293 (1 HSPs)
scaffold1293 (16-59)||(353-396)
[»] chr5 (1 HSPs)
chr5 (62-97)||(36447626-36447661)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 62 - 265
Target Start/End: Complemental strand, 37244973 - 37244771
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaaccannnnnnnataatttaattctcactttttctctctatgtttaattgtggagattccgctt 161  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||| ||||||||||||||||||||| |||    
T  37244973 tttcttcattttcaatcttcaccattaaaatacaacaaccatttttttataatttaattctcactttctctctc-atgtttaattgtggagattccactt 37244875  T
Q  162 gaggagaatactgcataatggcaaatgagtactacatttattttggcaaaagtgctgcannnnnnnaaaacgataagtgctgcccttaaattgcataatt 261  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||| ||||||||||||||||||    
T  37244874 gaggagaacactgcataatggcaaatgagtactacatttattttggcaaaagtgctgcatttttttaaaacgatgagtgctacccttaaattgcataatt 37244775  T
Q  262 ttga 265  Q
    ||||    
T  37244774 ttga 37244771  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 23690200 - 23690298
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaaccannnnnnnataatttaattctcactttttctctctatgtttaattgtggagattccgctt 161  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||| | ||| |||||| |||||||||||| |||||||| |||    
T  23690200 tttcttcattttcaatcttcaccattaaaatacaacaacc---tttttttaatttaattctgaatttctctctc-atgtttaattgttgagattccactt 23690295  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 7243829 - 7243867
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaac 100  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  7243829 tttctccattttcaatcttcactattaaaatacaacaac 7243867  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 30467177 - 30467217
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacca 102  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  30467177 tttctccattttcaatcttcatcattataatacaacaacca 30467217  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 42756489 - 42756432
Alignment:
Q  10 aagaatatgatgtggttgacaaagtgacgttttaaaatgacgtggcactttatttctt 67  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42756489 aagaaaatgatgtggttgacaaagtgacgttttaaaatgatgtggcactttatttctt 42756432  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 5472737 - 5472699
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaac 100  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  5472737 tttcttcattttcaatctccaccattaaaacacaacaac 5472699  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 15536270 - 15536368
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaaccannnnnnnataatttaattctcactttttctctctatgtttaattgtggagattccgctt 161  Q
    ||||| ||||||||||||||||||||||||||||||||||         |||||||||||||| ||| |||||| |||||||||||| |||||||| |||    
T  15536270 tttctccattttcaatcttcaccattaaaatacaacaacc---tttttttaatttaattctcaatttctctctc-atgtttaattgttgagattccactt 15536365  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 22545164 - 22545203
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacc 101  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  22545164 tttctccattttcaatcttcaccattaaaatacaacaacc 22545203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 23930438 - 23930398
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacca 102  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  23930438 tttctccattttcaatctccaccattaaaatacaacaacca 23930398  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 40032279 - 40032319
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacca 102  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  40032279 tttctccattttcaatctacaccattaaaatacaacaacca 40032319  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 24360676 - 24360625
Alignment:
Q  16 atgatgtggttgacaaagtgacgttttaaaatgacgtggcactttatttctt 67  Q
    ||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24360676 atgatgtggttgacaaagtggtgttttaaaatgatgtggcactttatttctt 24360625  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 2158456 - 2158493
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaa 99  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  2158456 tttctccattttcaatctccaccattaaaatacaacaa 2158493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 32429566 - 32429526
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacca 102  Q
    ||||| |||||||||||| ||||||||||||| ||||||||    
T  32429566 tttctccattttcaatctccaccattaaaatataacaacca 32429526  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 20443112 - 20443163
Alignment:
Q  16 atgatgtggttgacaaagtgacgttttaaaatgacgtggcactttatttctt 67  Q
    ||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  20443112 atgatgtggttgacaaagtggtgttttaaaatgatgtggcactttatttctt 20443163  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 37526423 - 37526463
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacca 102  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  37526423 tttctccattttcaatctccaccattaaaatacaacaacca 37526463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 45358097 - 45358057
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaacaacca 102  Q
    ||||| ||||||||| ||||||| |||||||||||||||||    
T  45358097 tttctccattttcaaacttcacccttaaaatacaacaacca 45358057  T

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Target: scaffold1315 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 1675 - 1718
Alignment:
Q  16 atgatgtggttgacaaagtgacgttttaaaatgacgtggcactt 59  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||    
T  1675 atgatgtggttaacaaagcgacgttttaaaatgatgtggcactt 1718  T

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Target: scaffold1293 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 396 - 353
Alignment:
Q  16 atgatgtggttgacaaagtgacgttttaaaatgacgtggcactt 59  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||    
T  396 atgatgtggttaacaaagcgacgttttaaaatgatgtggcactt 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 36447626 - 36447661
Alignment:
Q  62 tttcttcattttcaatcttcaccattaaaatacaac 97  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36447626 tttctccattttcaatcttcaccattaaaatacaac 36447661  T

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