View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20695_low_20 (Length: 267)
Name: NF20695_low_20
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_20 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 730 - 538
Alignment:
| Q |
1 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
730 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacc |
631 |
T |
|
| Q |
101 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
630 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8383 - 8191
Alignment:
| Q |
1 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8383 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacc |
8284 |
T |
|
| Q |
101 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8283 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
8191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 554 - 500
Alignment:
| Q |
207 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
261 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 8207 - 8153
Alignment:
| Q |
207 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
261 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
8153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 6506705 - 6506513
Alignment:
| Q |
1 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6506705 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacc |
6506606 |
T |
|
| Q |
101 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6506605 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
6506513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 6522024 - 6522161
Alignment:
| Q |
1 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacc |
100 |
Q |
| |
|
||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| ||||||| || |||||| |||| || ||||||| |
|
|
| T |
6522024 |
tgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaatag-----gt-taggtgctagaattgttagacc |
6522117 |
T |
|
| Q |
101 |
cagttgttatttgagatatgaaaccaattcacttttctatcaac |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6522118 |
cagttgtaatttgagatatgaaaccaattcattcttctatcaac |
6522161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 6517005 - 6516855
Alignment:
| Q |
7 |
aaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttg |
106 |
Q |
| |
|
||||||| |||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || ||| || | |||| || ||||||||||||| |
|
|
| T |
6517005 |
aaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagt------gctagagttgttagacccagttg |
6516912 |
T |
|
| Q |
107 |
ttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttc |
163 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
6516911 |
ttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 6512612 - 6512451
Alignment:
| Q |
1 |
tgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacc |
100 |
Q |
| |
|
||||| || ||||||| ||||| ||||||| ||||||||||||| |||||||| |||||| |||| || ||||| | |||| || ||||||| |
|
|
| T |
6512612 |
tgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggt------gctagaattgttagacc |
6512519 |
T |
|
| Q |
101 |
cagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcat |
168 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||| ||||||| |
|
|
| T |
6512518 |
aagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 6506529 - 6506475
Alignment:
| Q |
207 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
261 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
6506475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University