View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_low_25 (Length: 247)
Name: NF20695_low_25
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_25 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37244709 - 37244479
Alignment:
| Q |
1 |
ttcgcttttaatttagttgctgatatatcaaaataaaattattctgcactacttattttcatgagtttaatcaatattgatagtaatacaatttgatgtt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37244709 |
ttcgtttttaatttagttgctgatatatcaaaatcaaattatgctgcactacttattttcatgagtttaatcaatattgatagtaatacaatttgatgtt |
37244610 |
T |
|
| Q |
101 |
tatcatctattttaatacctttttaaggttgatttcctggttgatgggtcaggtttatatcattccaacttttatatttgtctttatttaatatattttt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
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| T |
37244609 |
tatcatctattttaatacccttttaaggttgatttcgtgattgatgggtcaggtttatgtcatcccaac-tttatatttgtctttatttaatatattttt |
37244511 |
T |
|
| Q |
201 |
ctttgcttaaaaaatgttaataatacaattac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37244510 |
ctttgcttaaaaaatgttaataatacaattac |
37244479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 23690597 - 23690645
Alignment:
| Q |
183 |
tttatttaatatatttttctttgcttaaaaaatgttaataatacaattac |
232 |
Q |
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||||||||||||||||| |||| ||||||||| | ||||||||||||||| |
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| T |
23690597 |
tttatttaatatattttcctttacttaaaaaa-gataataatacaattac |
23690645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 40791972 - 40791942
Alignment:
| Q |
183 |
tttatttaatatatttttctttgcttaaaaa |
213 |
Q |
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| T |
40791972 |
tttatttaatatatttttctttgcttaaaaa |
40791942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 15536649 - 15536714
Alignment:
| Q |
166 |
caacttttatatttgtctttatttaatatatttttctttgcttaaaaaatgttaataatacaattac |
232 |
Q |
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| T |
15536649 |
caacttttatactcgcttttatttaatatattttcctttacttaaaaaa-gataataatacaattac |
15536714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 22545523 - 22545587
Alignment:
| Q |
166 |
caacttttatatttgtctttatttaatatatttttctttgcttaaaaaatgttaataatacaatta |
231 |
Q |
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||||||||||| | | ||||||||||||||||| |||| ||||||||| | |||||||||||||| |
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| T |
22545523 |
caacttttatactcgcttttatttaatatattttcctttacttaaaaaa-gataataatacaatta |
22545587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 64480 - 64447
Alignment:
| Q |
181 |
tctttatttaatatatttttctttgcttaaaaaa |
214 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
64480 |
tctttattttatatatttttctttgcttaaaaaa |
64447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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