View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20695_low_26 (Length: 247)
Name: NF20695_low_26
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_26 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 42664580 - 42664692
Alignment:
| Q |
14 |
atgaggggaagaattttcagataggatttgtgaggacggcagtggagttttgaggacagcggttttcttggacgcgcaaccttccttgcgttcatgaaca |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
42664580 |
atgagtggaagaattttcagataggatttgtgaggacggcagtggagttttgaggacagcggttttcttggacgtgcaacctttcttgcgttcatgaaca |
42664679 |
T |
|
| Q |
114 |
acatggaaggaag |
126 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42664680 |
acatggaaggaag |
42664692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 42664733 - 42664807
Alignment:
| Q |
168 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42664733 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca |
42664807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 9929315 - 9929241
Alignment:
| Q |
168 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca |
242 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||| || |||| || ||||||| |||||||||| |
|
|
| T |
9929315 |
gtgtgatctactgtataatatcatatatgaacttgatcaatctaacgattctcaatagttgttccaagtggtcca |
9929241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 37783414 - 37783488
Alignment:
| Q |
168 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca |
242 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||| || |||| || ||||||| |||||||||| |
|
|
| T |
37783414 |
gtgtgatctactgtataatatcatatatgaacttgatcaatctaacgattctcaatagttgttccaagtggtcca |
37783488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 15561525 - 15561451
Alignment:
| Q |
168 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca |
242 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||| ||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
15561525 |
gtgtgatctagtgtataatatcatatgtgaacttgattaatctaatggttctcaatggttgttcgaaatggtcca |
15561451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 6056932 - 6057006
Alignment:
| Q |
168 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtcca |
242 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||| ||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
6056932 |
gtgtgatctagtgtataatatcatatgtgaacttgattaatttaatggttcttaatggttgttcgaagtggtcca |
6057006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 14050891 - 14050964
Alignment:
| Q |
171 |
tgatctagtgtgtaatatcatatatgaatttgatcaatctaatgactctcgatggttgttcgaagtggtccatcgat |
247 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||| |||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
14050891 |
tgatctagtgtgtaatagcatatatgaacttgat-aatttaatga--ctccatggttgttgagagtggtccatcgat |
14050964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 27982799 - 27982868
Alignment:
| Q |
11 |
aatatgaggggaagaattttcagataggatttgtgaggacggcagtggagttttgaggacagcggttttc |
80 |
Q |
| |
|
|||||||| |||| ||| |||||||||||| |||||| |||| ||||||| |||| ||||| | |||||| |
|
|
| T |
27982799 |
aatatgagaggaataatcttcagataggatatgtgagaacggtagtggaggtttgtggacaacagttttc |
27982868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 27982979 - 27983023
Alignment:
| Q |
168 |
gtgtgatctagtgtgtaatatcatatatgaatttgatcaatctaa |
212 |
Q |
| |
|
|||||||||| ||| | |||||||||||||| ||||||||||||| |
|
|
| T |
27982979 |
gtgtgatctactgtattatatcatatatgaacttgatcaatctaa |
27983023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University