View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_low_31 (Length: 236)
Name: NF20695_low_31
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_31 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 28575304 - 28575524
Alignment:
| Q |
16 |
acaataacagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgttt |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28575304 |
acaataacagactttgctattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttt |
28575403 |
T |
|
| Q |
116 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccattccacattatgattccaatagacattagtaaacaaattaaattt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
28575404 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccactccacattgtgattccaatagacattagtaaacaaattaaaatt |
28575503 |
T |
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| Q |
216 |
aatccaattagataaatcacc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
28575504 |
aatccaattagataaatcacc |
28575524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 16237140 - 16236920
Alignment:
| Q |
16 |
acaataacagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgttt |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16237140 |
acaataacagactttgctattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttt |
16237041 |
T |
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| Q |
116 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccattccacattatgattccaatagacattagtaaacaaattaaattt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
16237040 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccactccacattgtgattccaatagacattagtaaacaaattaaaatt |
16236941 |
T |
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| Q |
216 |
aatccaattagataaatcacc |
236 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16236940 |
aatccaattagataaatcacc |
16236920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 32714212 - 32714432
Alignment:
| Q |
16 |
acaataacagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgttt |
115 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32714212 |
acaataacagactttgctattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttt |
32714311 |
T |
|
| Q |
116 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccattccacattatgattccaatagacattagtaaacaaattaaattt |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
32714312 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccactccacattgtgattccaatagacattagtaaacaaattaaaatt |
32714411 |
T |
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| Q |
216 |
aatccaattagataaatcacc |
236 |
Q |
| |
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||||||||||||||||||||| |
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| T |
32714412 |
aatccaattagataaatcacc |
32714432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 160967 - 160868
Alignment:
| Q |
23 |
cagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgtttccttgtt |
122 |
Q |
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||||| ||||| ||||| | ||||||||| |||| |||||| ||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
160967 |
cagaccttgttgttgcaatgtgataatcaccaacacaactcaaaataatatttt-agcatgtaaaggtctttgaaaattatcattatgagtttccttgtt |
160869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 20633496 - 20633716
Alignment:
| Q |
16 |
acaataacagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgttt |
115 |
Q |
| |
|
||||||||| | |||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20633496 |
acaataacaaattttgctatagcattgtgataatcattaacataaatcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttt |
20633595 |
T |
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| Q |
116 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccattccacattatgattccaatagacattagtaaacaaattaaattt |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20633596 |
ccttgtttctccaattccatatagtgtgacaagcagtggcccaaaagtctctccactccacattattattccaatagacattagtaaacaaattaaattt |
20633695 |
T |
|
| Q |
216 |
aatccaattagataaatcacc |
236 |
Q |
| |
|
||||||| ||||||||||||| |
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|
| T |
20633696 |
aatccaactagataaatcacc |
20633716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 38835990 - 38836210
Alignment:
| Q |
16 |
acaataacagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgttt |
115 |
Q |
| |
|
|||||||||||||||| || | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
38835990 |
acaataacagactttgctaatacattgtgataataattaacataactcataataatatttttagcatgtaaaggtctttggtagttgtcattatgagttt |
38836089 |
T |
|
| Q |
116 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccattccacattatgattccaatagacattagtaaacaaattaaattt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38836090 |
ccttgtttctccaattccatatagcgtgacaagcggtggcccaaaagtctctccactccacattatgattccaatagacattagtaaacaaattaaatat |
38836189 |
T |
|
| Q |
216 |
aatccaattagataaatcacc |
236 |
Q |
| |
|
||||||| ||||||||||||| |
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| T |
38836190 |
aatccaactagataaatcacc |
38836210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 18568568 - 18568360
Alignment:
| Q |
16 |
acaataacagactttgttattgcattatgataatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgcgttt |
115 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||| |||| |
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|
| T |
18568568 |
acaataacaaactttgttgttgcattgtgataatcgttaacataactca--ataatatttttagcatgtaaaggtgtttggtaattattattatgagttt |
18568471 |
T |
|
| Q |
116 |
ccttgtttctccaattccatatagcgtgacaagcagtggcccaaaagtctctccattccacattatgattcc-aatagacattagtaaacaaattaaatt |
214 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |||||| || ||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
18568470 |
ccttgtttctccaattccaaatagcgt-----------gcccaaaagtttctccactctacattatgattcctagtagacattagtaaacaaattaaatt |
18568382 |
T |
|
| Q |
215 |
taatccaattagataaatcacc |
236 |
Q |
| |
|
||||||||| |||||| |||| |
|
|
| T |
18568381 |
taatccaatgcgataaaccacc |
18568360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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