View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_low_4 (Length: 512)
Name: NF20695_low_4
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_4 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Original strand, 9344 - 9828
Alignment:
| Q |
15 |
aagattgacagtgttatttctggtgaaaaagttgtaaggaaatatttgtcaacctaacgacgtcgacaataaagtgggcggcgacactgttggtatggac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9344 |
aagattgacagtgttatttctggtgaaaaagttgtaaggaaatatttgtcaacctaacgacgtcgacaataaagtggtcggcgacactgttggtatggac |
9443 |
T |
|
| Q |
115 |
atctggggtcaacaatgcatccatttcttgctgtaatgtaaaacgaaaatggtgaatatgatactaaaagtgaattgaagattgtgtattataattaaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
9444 |
atctggggtcaacaatgcatccatttcttgctgtaatgtaaaacgaaaatggttaatatgatactaaaagtgaattgaagattgtgtattgtaagtaaat |
9543 |
T |
|
| Q |
215 |
aagaaaatttgaagaggattataagatcttaccactgacgacaagaaatagtgcaagaaaaaatatcaaagcataaataaatttgtgaattttatccata |
314 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9544 |
aagaaaattttaagaggattataagttcttaccattgacgacaagaaatagtgcaagaaaaaatatcaaagcataaataaatttgtgaattttatccata |
9643 |
T |
|
| Q |
315 |
tctcttttcttctctgcatacatcgcataaagaattgtatgatcattttatactgaaaaatatctcattttctattcacatgaagtaaatannnnnnnac |
414 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || |
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| T |
9644 |
tctcttttcttctctgcatatatcgcataaagaattgtatgatcattttatactgaaaaatatctcattttctgttcacattaagtaaatatttttttac |
9743 |
T |
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| Q |
415 |
cagttacggagctatgaaactctttcttgacttagaatctttattaaatgtctcttatgcatgtgaatgtgtcatgtttgtccct |
499 |
Q |
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| T |
9744 |
cagttacggagctatgcaactctttcttgacttagaatctttattaaatgtctcttatgcatgtgaatgtgtcatgtttgtccct |
9828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Complemental strand, 23383121 - 23382637
Alignment:
| Q |
15 |
aagattgacagtgttatttctggtgaaaaagttgtaaggaaatatttgtcaacctaacgacgtcgacaataaagtgggcggcgacactgttggtatggac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23383121 |
aagattgacagtgttatttctggtgaaaaagttgtaaggaaatatttgtcaacctaacgacgtcgacaataaagtggtcggcgacactgttggtatggac |
23383022 |
T |
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| Q |
115 |
atctggggtcaacaatgcatccatttcttgctgtaatgtaaaacgaaaatggtgaatatgatactaaaagtgaattgaagattgtgtattataattaaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
23383021 |
atctggggtcaacaatgcatccatttcttgctgtaatgtaaaacgaaaatggttaatatgatactaaaagtgaattgaagattgtgtattgtaagtaaat |
23382922 |
T |
|
| Q |
215 |
aagaaaatttgaagaggattataagatcttaccactgacgacaagaaatagtgcaagaaaaaatatcaaagcataaataaatttgtgaattttatccata |
314 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23382921 |
aagaaaattttaagaggattataagttcttaccattgacgacaagaaatagtgcaagaaaaaatatcaaagcataaataaatttgtgaattttatccata |
23382822 |
T |
|
| Q |
315 |
tctcttttcttctctgcatacatcgcataaagaattgtatgatcattttatactgaaaaatatctcattttctattcacatgaagtaaatannnnnnnac |
414 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || |
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| T |
23382821 |
tctcttttcttctctgcatatatcgcataaagaattgtatgatcattttatactgaaaaatatctcattttctgttcacattaagtaaatatttttttac |
23382722 |
T |
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| Q |
415 |
cagttacggagctatgaaactctttcttgacttagaatctttattaaatgtctcttatgcatgtgaatgtgtcatgtttgtccct |
499 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23382721 |
cagttacggagctatgcaactctttcttgacttagaatctttattaaatgtctcttatgcatgtgaatgtgtcatgtttgtccct |
23382637 |
T |
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