View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20695_low_6 (Length: 447)
Name: NF20695_low_6
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20695_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 5231052 - 5231492
Alignment:
| Q |
1 |
tatatttgcttgtagtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231052 |
tatatttgattgtagtaccatggaggaactaattttggtagaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaat |
5231151 |
T |
|
| Q |
101 |
atggtatgcagtaaggtttaaattgtttcatggtttgagtttcaacctaacaattagaaaatttttaacgcctttcaaaatattaggacttccaaatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5231152 |
atggtatgcagtaaggtttaaattgtttcatggtttgagttataacctaacaattagaaaaattttaacgcctttcaaaatattaggacttccaaatgaa |
5231251 |
T |
|
| Q |
201 |
ccaaaatggagccatttgaaaaatttacataaagcaataaaacaatgtgagccagctttgatttctgtggatcctacagtcacatggcttggaaataaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231252 |
ccaaaatggagccatttgaaaaatttacataaagcaataaaacaatgtgagccagctttgatttctgtggatcctacagtcacatggcttggaaataaaa |
5231351 |
T |
|
| Q |
301 |
accttgaggtaaagtctatgacttagttcatgataagattatggtccaaaattgttactttattgaagcttagtttaannnnnnnnngttaatgtaatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
5231352 |
accttgaggtaaagtctatgacttagttcatgataagattatggtccaaaattgttactttattgaagcttagtttgatttttttttgttaatgtaatct |
5231451 |
T |
|
| Q |
401 |
taggcgcatgtgtactacgtaaataccagtgtctgtgctgc |
441 |
Q |
| |
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||||| |||||||||||||||||||||||| | |||||||| |
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| T |
5231452 |
taggcacatgtgtactacgtaaataccagtatttgtgctgc |
5231492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 7346067 - 7346105
Alignment:
| Q |
67 |
acaagctatgattatgatgctcctattgatgaatatggt |
105 |
Q |
| |
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| T |
7346067 |
acaagctatgactatgatgctccaattgatgaatatggt |
7346105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 17126621 - 17126716
Alignment:
| Q |
14 |
agtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatgc |
109 |
Q |
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||||||||||||||||||||||||| |||||||| ||| ||||| |||||||| || || ||||||||||||||||| |||||||||||||||| |
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| T |
17126621 |
agtaccatggaggaactaattttggaagaacatcttctggccttttcattgccacgagttacgattatgatgctcctatcgatgaatatggtatgc |
17126716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 42988787 - 42988695
Alignment:
| Q |
14 |
agtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggta |
106 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||| || |||||| ||| ||||| ||||||||||| |||||||| ||| ||||||||||||||| |
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| T |
42988787 |
agtatcatggaggaacaaattttggtagaacagctggtggtcctttcattgctacaagctatgactatgatgcacctcttgatgaatatggta |
42988695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 315
Target Start/End: Original strand, 17126793 - 17126925
Alignment:
| Q |
180 |
atattaggacttccaaatgaaccaaaatggagccatttgaaaaatttacataaagcaataaaacaatgtgagccagctttgatttctgtggatcctacag |
279 |
Q |
| |
|
|||| ||||||| || ||||||||||||| | ||| | | | ||||||||||||||||||| ||||| ||| ||||||| | ||||| ||||| |||| |
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| T |
17126793 |
atatcaggacttataagtgaaccaaaatgggggcatctaagagatttacataaagcaataaagcaatgcgagtcagctttagtgtctgttgatccgacag |
17126892 |
T |
|
| Q |
280 |
tcacatggcttggaaataaaaaccttgaggtaaagt |
315 |
Q |
| |
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| |||||| |||| ||||||||||||||||||| |
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| T |
17126893 |
tgtcatggcctgga---aaaaaccttgaggtaaagt |
17126925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 5452874 - 5452968
Alignment:
| Q |
14 |
agtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatg |
108 |
Q |
| |
|
|||| ||||| ||||| |||||||| |||| || |||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||| |
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| T |
5452874 |
agtatcatggtggaacaaattttggaagaaccgctggtggtccttttattgccacaagctatgattatgatgcacctcttgatgaatacggtatg |
5452968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 52647347 - 52647440
Alignment:
| Q |
13 |
tagtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggta |
106 |
Q |
| |
|
||||||||||||||||| |||||||| ||| || || | |||| || ||| | ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
52647347 |
tagtaccatggaggaaccaattttggacgatcagctgggggtccattcatttctacaagctatgactatgatgctccaattgatgaatatggta |
52647440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 22014515 - 22014418
Alignment:
| Q |
13 |
tagtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatgca |
110 |
Q |
| |
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|||||||||||||| ||||| |||||||||||| | |||| | ||| ||| | || || |||||||||||||| || |||||||| ||||||||||| |
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| T |
22014515 |
tagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttatgattatgatgcacccattgatgagtatggtatgca |
22014418 |
T |
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