View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20695_low_9 (Length: 377)

Name: NF20695_low_9
Description: NF20695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20695_low_9
NF20695_low_9
[»] chr2 (1 HSPs)
chr2 (10-360)||(38584927-38585277)
[»] chr4 (3 HSPs)
chr4 (267-360)||(53447402-53447495)
chr4 (270-360)||(36626788-36626878)
chr4 (270-354)||(53324475-53324559)
[»] chr7 (1 HSPs)
chr7 (267-351)||(46430288-46430372)
[»] chr8 (1 HSPs)
chr8 (275-339)||(25980117-25980181)
[»] chr3 (2 HSPs)
chr3 (150-267)||(13849428-13849545)
chr3 (217-278)||(47298390-47298450)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 38585277 - 38584927
Alignment:
Q  10 gcacagagagtacaaattgttcttataggacagaagagatggatagatatagtgccctttagcatgagaaaaacccatgtataactatggaagtggtgaa 109  Q
    |||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38585277 gcacagagagtacacattgtttttataagacaaaagagatggatagatatagtgccctttagcatgagaaaaacccatgtataactatggaagtggtgaa 38585178  T
Q  110 ggggctgttgtgatgcagtataacaaaaatataaggtataaaaggaaaccatggagagagacatgggtaaaaatggaaaatcaaggataaaaggtaattc 209  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38585177 ggtgctgttgtgatgcagtataacaaaaatataaggtataaaaggaaaccatggagagagacatgggtaaaaatggaaaatcaaggataaaaggtacttc 38585078  T
Q  210 ttcccattttcttcgcatatgagcgaagagacctaaaagtggtaggccccaccaattttggtctctctcccctttttcttctatctcccaaacaggagaa 309  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38585077 ttcccattttgttcgcatctgagcgaagagacctaaaagtggtaggccccaccaattttggtctctctcccctttttcttctgtctcccaaacaggagaa 38584978  T
Q  310 gtgggacatctccttcctctttctctcttcagtatttctctcgcccctatt 360  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38584977 gtgggacatctccttcctctttctcttttcagtatttctctcgcccctatt 38584927  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 360
Target Start/End: Complemental strand, 53447495 - 53447402
Alignment:
Q  267 ttggtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatt 360  Q
    ||||||||||| |||| |||||||  ||||||||||||||||| |||| |||||||| |||||||||||||| | || ||||||||||| ||||    
T  53447495 ttggtctctcttccctatttcttcagtctcccaaacaggagaaatggggcatctcctccctctttctctctttaatacttctctcgcccttatt 53447402  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 36626788 - 36626878
Alignment:
Q  270 gtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcccctatt 360  Q
    |||||||||| || ||||||   |||||||||||||||||||||| |||||||||||| |||||||||||| |  |||||||||| |||||    
T  36626788 gtctctctcctctatttctttggtctcccaaacaggagaagtggggcatctccttcctatttctctcttcaatgcttctctcgcctctatt 36626878  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 53324475 - 53324559
Alignment:
Q  270 gtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctcgcc 354  Q
    |||||||||| || ||||||   |||||||||||||||||||||  |||||||||||| ||||| |||||| |  ||||||||||    
T  53324475 gtctctctcctctatttctttggtctcccaaacaggagaagtggagcatctccttcctatttctatcttcaatgcttctctcgcc 53324559  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 351
Target Start/End: Original strand, 46430288 - 46430372
Alignment:
Q  267 ttggtctctctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttcagtatttctctc 351  Q
    |||||||||||||||| ||||||||  ||||||| ||||||||||| |||||||| ||||| |||||||||||| || |||||||    
T  46430288 ttggtctctctcccctatttcttctgcctcccaatcaggagaagtgtgacatctctttcctatttctctcttcaatacttctctc 46430372  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 25980181 - 25980117
Alignment:
Q  275 tctcccctttttcttctatctcccaaacaggagaagtgggacatctccttcctctttctctcttc 339  Q
    |||||||| |||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||    
T  25980181 tctcccctatttcttctgtctcccaatcaggagaagtgtggcatctccttcctctttctctcttc 25980117  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 13849428 - 13849545
Alignment:
Q  150 aaaggaaaccatggagagagacatgggtaaaaatggaaaatcaaggataaaaggtaattcttcccattttcttcgcatatgagcgaagagacctaaaagt 249  Q
    |||||||||||  ||||| |||  ||||||||||||||||  ||||| ||||     |||||| |  |||||||||||||||| ||||||| ||||||||    
T  13849428 aaaggaaaccaccgagagtgacgagggtaaaaatggaaaagtaaggaaaaaaacactttcttcactctttcttcgcatatgagagaagagagctaaaagt 13849527  T
Q  250 ggtaggccccaccaattt 267  Q
    ||| || |||||| ||||    
T  13849528 ggtgggacccacctattt 13849545  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 47298450 - 47298390
Alignment:
Q  217 tttcttcgcatatgagcgaagagacctaaaagtggtaggccccaccaattttggtctctctc 278  Q
    |||||||||||||||| ||||||| ||||||||||| || |||| | ||||| |||||||||    
T  47298450 tttcttcgcatatgagagaagagagctaaaagtggtgggacccatctatttt-gtctctctc 47298390  T

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