View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20696_high_1 (Length: 632)
Name: NF20696_high_1
Description: NF20696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20696_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 117 - 430
Target Start/End: Complemental strand, 17751895 - 17751579
Alignment:
| Q |
117 |
atggttagaaacacatctgacgtaaaattttgtgtgatctcttcaatctgaaaattaatctctttatat--gagacccacccacttacatacatttaact |
214 |
Q |
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| T |
17751895 |
atggttagaagcacatttgacgtaaaattttgtgtgatctcttcaatctgaaaattaatctctttatatatgagacccactcacttacatagatttaact |
17751796 |
T |
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| Q |
215 |
aagacaaataatattactctttcttaaaaaa-tataattttcaacaactttaacgaaacaattggacagaagtggtgaacgagctcctccaaaaacgaat |
313 |
Q |
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| T |
17751795 |
aagacaaatagtattaatctttcctaaaaaaatataattttcaacaactttaaccaaacaattggacagaagtggtgaacgagctcctccaaaaacgaat |
17751696 |
T |
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| Q |
314 |
tcttcaaaagagcttgagtttgattattagatacaataattcttgatcatattttacttacatttcagccaaacttcagaatactatgatccattttttc |
413 |
Q |
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| T |
17751695 |
tcttcaaaagagcttgagtttgattattagatacaataattcttaatcatattttacttatctttcggccgagctccagactactataatccattttttc |
17751596 |
T |
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| Q |
414 |
taaaaattggagggtta |
430 |
Q |
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| T |
17751595 |
taaaaatcggagggtta |
17751579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 427 - 621
Target Start/End: Complemental strand, 17751539 - 17751346
Alignment:
| Q |
427 |
gttataatttgtcaatactcattttattttcaactagtactaataggcatcttgacaagagacagacaccattactgattagctattgatttaattttcc |
526 |
Q |
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| T |
17751539 |
gttataatttgttaatactccttttattttcaacaagtactaataggcatcttgacaagagacagacaccattactgattagctattgatttaattttcc |
17751440 |
T |
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| Q |
527 |
agaaattgatccaactataaattgccnnnnnnntctggttgttataattgacatgagacaaatgtttttctatgcaatagctgtagtagagaata |
621 |
Q |
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| T |
17751439 |
agaaattgatccaactataaattgccgggggggtctggttgttataattgacatgagacaaatg-tattctatgcaatagctgtagtagagaata |
17751346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 17752003 - 17751936
Alignment:
| Q |
18 |
actagatgtgtccgagtaagtggtagttagatatgattttaaatatgtcgatttgtttagttaaaatt |
85 |
Q |
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| T |
17752003 |
actagatgtgtccgagtaagtggcagttagatatgattttaaatatgtcgatttgtttagttaaaatt |
17751936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 589
Target Start/End: Complemental strand, 17750683 - 17750620
Alignment:
| Q |
526 |
cagaaattgatccaactataaattgccnnnnnnntctggttgttataattgacatgagacaaat |
589 |
Q |
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| T |
17750683 |
cagaaattgatccaaccataaattgccgggggggtctggtggttataattggcatgagacaaat |
17750620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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