View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20696_low_3 (Length: 409)
Name: NF20696_low_3
Description: NF20696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20696_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 44730933 - 44730555
Alignment:
| Q |
14 |
aggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaacttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44730933 |
aggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaacttt |
44730834 |
T |
|
| Q |
114 |
gtaatttgagcaaaactgtgattgattgtgcatttataagctacattcatcatggtttctacaactagttgtgtgtatattctatacatctagcagttat |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44730833 |
gtaatttgagcaaaactgtgattgattgtgcaattataagctacattcatcatggtttctacaactagttgtgtgtatattctataaatctagcagttat |
44730734 |
T |
|
| Q |
214 |
acttgtgcagttatcaatacaatgaaaaatattaagaggacatcttatagttcactgttcttctgtgctcttttgtttgcttttctaattgtgagatacc |
313 |
Q |
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| T |
44730733 |
acttgtgcatttatcaatacaatgaaaaatattaagaggacatcttatagttcactgttcttctgtgctcttttgtttgcttttctaattgtgagatacc |
44730634 |
T |
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| Q |
314 |
acaaatcttgtttgtaacttacaagggatctcacgaagtgtttcttgtaagtattggattttggcaaactcaaaacttg |
392 |
Q |
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| T |
44730633 |
acaaatcttgtttgtaacttacaagggatctcacgaagtgtttcttgtaagcattggattttggcaaactcaaaacttg |
44730555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 16867311 - 16867096
Alignment:
| Q |
23 |
gatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaactttgtaatttga |
122 |
Q |
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| T |
16867311 |
gatgctgctgaaggactttgtggcattgcaatgcaagcatcataccctactgcttaaatgtcaaaattaatacttatgttatctaaactttgtaattcaa |
16867212 |
T |
|
| Q |
123 |
gcaaaactgtgattgattgtgcatttataagctacattcatcatggtttctacaactagttgtgtgtatattctatacatctagcagttatacttgtgca |
222 |
Q |
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| ||| |||||| | |||||||||||| ||||||||||||||||||||||| || |||||||| | ||||||||||||||| | |||||||||||| |
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| T |
16867211 |
actaaattgtgatggtttgtgcatttattagctacattcatcatggtttctaagaccagttgtgtat-tattctatacatctactggatatacttgtgca |
16867113 |
T |
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| Q |
223 |
gttatcaatacaatgaa |
239 |
Q |
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|||||||||||||||| |
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| T |
16867112 |
tttatcaatacaatgaa |
16867096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 30881853 - 30882042
Alignment:
| Q |
5 |
aagaagcataggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttac |
104 |
Q |
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|||| ||| |||||||| ||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || ||||| |
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| T |
30881853 |
aagatgcaaaggggagtcgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttac |
30881952 |
T |
|
| Q |
105 |
ctaaactttgtaatttgagcaaaactgtgattgattgtgcatt-------tataagctacattcatcatggtttctacaactagttgtgt |
187 |
Q |
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||||||||||||||| || |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||| |
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| T |
30881953 |
ctaaactttgtaattcgatcaaagctgtgattgattgtgcatttatcatctattagctacattcatcatggtttctatgactatttgtgt |
30882042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 30719506 - 30719394
Alignment:
| Q |
5 |
aagaagcataggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttac |
104 |
Q |
| |
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|||| ||| |||||||| ||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || ||||| |
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| T |
30719506 |
aagatgcaaaggggagtcgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttac |
30719407 |
T |
|
| Q |
105 |
ctaaactttgtaa |
117 |
Q |
| |
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||||||| ||||| |
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| T |
30719406 |
ctaaactatgtaa |
30719394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 8899477 - 8899742
Alignment:
| Q |
14 |
aggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaacttt |
113 |
Q |
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|||||||| || || |||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
8899477 |
aggggagttgaagctgctgaagggctctgtggcattgcaatgcaggcatcttaccctactgcttaaatgccaaacttaatacttatgttacctaaacttt |
8899576 |
T |
|
| Q |
114 |
gtaatttgagcaaaactgtgattgattgtgcatttataagctacattcatcatg-------gtttctacaactagttgtgtgtatattctatacatctag |
206 |
Q |
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||| || | | |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
8899577 |
gtatttcaacctaaactgtgattgtttgtgcatttatcagctacattcatcatggtttctagtttctacaactagt--tgtgtatattctatacatctac |
8899674 |
T |
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| Q |
207 |
cagttatacttgtgcagttatcaatacaatgaaaaatattaagaggacatcttatagttcactgttctt |
275 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||||| | |||||| ||||||| ||||| |
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| T |
8899675 |
atgttatacttgtgcatttatcaatacaatg-aagatattaagagtaaatcttactgttcacttttctt |
8899742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 31727635 - 31727702
Alignment:
| Q |
14 |
aggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaatt |
81 |
Q |
| |
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||||| |||||||| | |||||||| |||||||||||||||||| ||||||| || ||||| ||||| |
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| T |
31727635 |
aggggtgtggatgcttcagaaggactatgtggcattgcaatgcaaccatcttatccaactgcataatt |
31727702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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