View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20697_high_1 (Length: 516)
Name: NF20697_high_1
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20697_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 42292809 - 42293254
Alignment:
| Q |
1 |
atcagtggaaaagaattgtggtttacgtattgaattatatccagaaatgtctaaaacaatcgcgcacaatcctccaattgcatctttcatagttaggatt |
100 |
Q |
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| T |
42292809 |
atcagtggaaaagaattgtggtttacgtattgaattatatccagaaatgtctaaaacaatcgcgcacaatcctccaattgcatctttcatagttaggatt |
42292908 |
T |
|
| Q |
101 |
cttagttatgctggaaatagcaaaatcttgactcaatcaggtgattcaagttctatgtttaaaaatatatataacttagttaaatgcaaatagtatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42292909 |
cttagttatgctggaaatagcaaaatcttgactcaatcaggtgattcaagttctatgtttaaaaatatatataacttagttaaatgcaaatagtatttga |
42293008 |
T |
|
| Q |
201 |
tttaatagttagctatatagtattaatatttgtgttgatcttgatcttttccacactgatgtagaaataaaagataaacctcttagcaataaggatagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42293009 |
tttaatagttagctatatagtattaatatttgtgttgatcttgatcttttccacactgatgtagaaataaaagataaacctcttagcaataaggatagct |
42293108 |
T |
|
| Q |
301 |
ttgtgtgggagataggggttccattacctggaaaattcataattgacattgagtttctggatttgaaaactacatgtccaaaggtaagtaagtatataat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42293109 |
ttgtgtgggagataggggttccattacctggaaaattcataattgacattgagtttctggatttgaaaactacatgtccaaaggtaagtaagtatataat |
42293208 |
T |
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| Q |
401 |
atatccaaattaaggttttgaataatatatgtaaacattgatacaa |
446 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42293209 |
atatccaaattaaggtattgaataatatatgtaaacattgatacaa |
42293254 |
T |
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