View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20697_high_4 (Length: 380)
Name: NF20697_high_4
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20697_high_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 1435168 - 1434805
Alignment:
| Q |
17 |
aattcggaaaattagtccctagttcgagaagttggtccctacatttacacacaaaaaatactataagaaaaacacaaaacatattgatctacctaaatca |
116 |
Q |
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| T |
1435168 |
aattcggaaaattagtccctagttcgagaagttggtccctacatttacacacaaaaaatactataagaaaaacacaaaacatattgatctacctaaatca |
1435069 |
T |
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| Q |
117 |
aacccaatctcatgactaccttcatcatttccacaatttccccattaatattcttttcctccttatcttcttaagcatataaatagaatcatattcgtac |
216 |
Q |
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| T |
1435068 |
aacccaatctcatgactaccttcatcatttccacaatttccccattaatattcttttcctccttatcttcttaagcatataaatagaatcatattcgtac |
1434969 |
T |
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| Q |
217 |
ctatggaggaatatgtaatgtaacttttaacaagtgggtcctactaccgtagcaggcccacataaatggcttggtatgaggggtccatcatgtctgctaa |
316 |
Q |
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| T |
1434968 |
cgatggaggaatatgtaatgtaacttttaacaagtgggtcctactaccctagcaggcccacataaatggcttggtatgaggggtccatcatgtctgctaa |
1434869 |
T |
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| Q |
317 |
ccagttaccagcttcattgcagctggatgtggcccacttcttggataaattctaaccaatcatt |
380 |
Q |
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| T |
1434868 |
ccagttaccagcttcattgcagctggatgtggcccacttcttggataaattctaaccaatcatt |
1434805 |
T |
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