View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20697_high_7 (Length: 271)
Name: NF20697_high_7
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20697_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 625208 - 624951
Alignment:
| Q |
1 |
gggtgagtagcttaatagatcaatcatgcatttgaatcgataacaaccaatgagacctaatgactaaatcagtttgatgaacaagttctagtccgttcac |
100 |
Q |
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| T |
625208 |
gggtgagtagcttaatagatcaatcatgcatttgaatcgataagaaccaatgagacctaatgactaaatcagtttgatgaacaagttctagtccgttcac |
625109 |
T |
|
| Q |
101 |
atgttattataatacatatttttaagaaatgtaatcatnnnnnnnnnnnnnnnnnnnngagcgaaatcgggacttcatcttctcaaagagctaggaaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
625108 |
atgttattataatacatatttttaagaaatgtaatcataaaaaattaaaaaataaaaagagtgaaatcgggacttcatcttctcaaagagctaggaaccc |
625009 |
T |
|
| Q |
201 |
taaatagctaatccaaaacttcattgtggttggtcgaccacattctcttccttctctg |
258 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
625008 |
taaacagctaatccaaaacttcattgtggttggtcgaccacattctattccttctctg |
624951 |
T |
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