View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20697_high_9 (Length: 252)

Name: NF20697_high_9
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20697_high_9
NF20697_high_9
[»] chr7 (6 HSPs)
chr7 (18-181)||(45044110-45044273)
chr7 (216-252)||(15577884-15577920)
chr7 (220-251)||(42696082-42696113)
chr7 (206-252)||(48880961-48881007)
chr7 (220-252)||(15329272-15329304)
chr7 (220-252)||(45637711-45637743)
[»] chr8 (8 HSPs)
chr8 (219-252)||(41819812-41819845)
chr8 (221-252)||(30835080-30835111)
chr8 (220-249)||(6108270-6108299)
chr8 (220-252)||(1645999-1646031)
chr8 (220-252)||(15187559-15187591)
chr8 (220-252)||(32064744-32064776)
chr8 (220-252)||(39772835-39772867)
chr8 (220-252)||(42755076-42755108)
[»] chr6 (8 HSPs)
chr6 (220-252)||(2309457-2309489)
chr6 (220-252)||(6127274-6127306)
chr6 (220-252)||(18365607-18365639)
chr6 (220-252)||(18370871-18370903)
chr6 (220-252)||(23291118-23291150)
chr6 (220-252)||(28675147-28675179)
chr6 (220-252)||(33695361-33695393)
chr6 (220-252)||(33696695-33696727)
[»] chr5 (8 HSPs)
chr5 (220-252)||(14138667-14138699)
chr5 (218-252)||(13664639-13664673)
chr5 (219-252)||(3362776-3362809)
chr5 (219-252)||(38899760-38899793)
chr5 (220-252)||(2477635-2477667)
chr5 (221-249)||(3522043-3522071)
chr5 (220-252)||(6043545-6043577)
chr5 (220-252)||(8145374-8145406)
[»] chr4 (5 HSPs)
chr4 (220-252)||(23964499-23964531)
chr4 (218-252)||(31078853-31078887)
chr4 (219-252)||(33530722-33530755)
chr4 (220-252)||(4751445-4751477)
chr4 (220-252)||(10442823-10442855)
[»] chr2 (6 HSPs)
chr2 (220-252)||(13354845-13354877)
chr2 (216-249)||(7475545-7475578)
chr2 (219-252)||(35160755-35160788)
chr2 (220-252)||(9293610-9293642)
chr2 (219-251)||(14941401-14941433)
chr2 (224-252)||(40262720-40262748)
[»] chr1 (5 HSPs)
chr1 (220-252)||(25973413-25973445)
chr1 (218-248)||(10167412-10167442)
chr1 (220-252)||(18404441-18404473)
chr1 (219-251)||(34519756-34519788)
chr1 (219-251)||(51620978-51621010)
[»] chr3 (8 HSPs)
chr3 (221-252)||(8320618-8320649)
chr3 (217-252)||(22426378-22426413)
chr3 (219-252)||(42297351-42297384)
chr3 (220-252)||(2754716-2754748)
chr3 (220-252)||(3574561-3574593)
chr3 (220-252)||(11347267-11347299)
chr3 (220-252)||(33839530-33839562)
chr3 (220-252)||(47402630-47402662)
[»] scaffold0096 (1 HSPs)
scaffold0096 (220-252)||(41010-41042)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 45044110 - 45044273
Alignment:
Q  18 attttgatataaattgattaattgatttagagattaatttaggctttgtttagatcaaaataaatgtaatttcgatgtaaattgatctagagacaannnn 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  45044110 atttcgatataaattgattaattgatttagagattaatttaggctttgtttagatcaaaataaatgtaatttcgatgtaaattgatctagagacaatttt 45044209  T
Q  118 nnnnagaaactttccnnnnnnncagacgtcattgttgtatatctccatcttctactaaaaatga 181  Q
        |||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  45044210 ttttagaaactttccaaaaaaacagacgtcattgttgtatatctccatcttctactaaaaatga 45044273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 15577920 - 15577884
Alignment:
Q  216 atttagagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15577920 atttagagcaatgctatatatcaagaaagattttatc 15577884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 220 - 251
Target Start/End: Original strand, 42696082 - 42696113
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttat 251  Q
    ||||||||||||||||||||||||||||||||    
T  42696082 agagcaatgttatatatcaagaaagattttat 42696113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 48881007 - 48880961
Alignment:
Q  206 acacgatataatttagagcaatgttatatatcaagaaagattttatc 252  Q
    |||| |||| |||| |||||||| |||||||||||||||||||||||    
T  48881007 acactatattattttgagcaatgctatatatcaagaaagattttatc 48880961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 15329272 - 15329304
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  15329272 agagcaatgctatatatcaagaaagattttatc 15329304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 45637711 - 45637743
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  45637711 agagcaatgctatatatcaagaaagattttatc 45637743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 41819845 - 41819812
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||||||||||||||||||||||||||    
T  41819845 tagagcaatgttatatatcaagaaagattttatc 41819812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 30835111 - 30835080
Alignment:
Q  221 gagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||||||||||||||||||||||||    
T  30835111 gagcaatgttatatatcaagaaagattttatc 30835080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 6108299 - 6108270
Alignment:
Q  220 agagcaatgttatatatcaagaaagatttt 249  Q
    ||||||||||||||||||||||||||||||    
T  6108299 agagcaatgttatatatcaagaaagatttt 6108270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 1646031 - 1645999
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  1646031 agagcaatgctatatatcaagaaagattttatc 1645999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 15187559 - 15187591
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  15187559 agagcaatgctatatatcaagaaagattttatc 15187591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 32064744 - 32064776
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  32064744 agagcaatgctatatatcaagaaagattttatc 32064776  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 39772867 - 39772835
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||| ||||||||    
T  39772867 agagcaatgttatatatcaagaaatattttatc 39772835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 42755108 - 42755076
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  42755108 agagcaatgatatatatcaagaaagattttatc 42755076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 2309489 - 2309457
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||||||||||||    
T  2309489 agagcaatgttatatatcaagaaagattttatc 2309457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 6127274 - 6127306
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  6127274 agagcaatgctatatatcaagaaagattttatc 6127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 18365639 - 18365607
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  18365639 agagcaatgctatatatcaagaaagattttatc 18365607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 18370903 - 18370871
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  18370903 agagcaatgctatatatcaagaaagattttatc 18370871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 23291150 - 23291118
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  23291150 agagcaatgctatatatcaagaaagattttatc 23291118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 28675147 - 28675179
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  28675147 agagcaatgctatatatcaagaaagattttatc 28675179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 33695393 - 33695361
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  33695393 agagcaatgctatatatcaagaaagattttatc 33695361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 33696695 - 33696727
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  33696695 agagcaatgctatatatcaagaaagattttatc 33696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 14138667 - 14138699
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||||||||||||    
T  14138667 agagcaatgttatatatcaagaaagattttatc 14138699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 13664639 - 13664673
Alignment:
Q  218 ttagagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||||||||||| |||||||||||||||    
T  13664639 ttagagcaatgttatatattaagaaagattttatc 13664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 3362776 - 3362809
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||| |||||||||||||||||||||||    
T  3362776 tagagcaatgctatatatcaagaaagattttatc 3362809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 38899793 - 38899760
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||| |||||||||||||||||||||||    
T  38899793 tagagcaatgctatatatcaagaaagattttatc 38899760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 2477635 - 2477667
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  2477635 agagcaatgctatatatcaagaaagattttatc 2477667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 3522071 - 3522043
Alignment:
Q  221 gagcaatgttatatatcaagaaagatttt 249  Q
    |||||||||||||||||||||||||||||    
T  3522071 gagcaatgttatatatcaagaaagatttt 3522043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 6043577 - 6043545
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  6043577 agagcaatgctatatatcaagaaagattttatc 6043545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 8145374 - 8145406
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||| ||||||||||||||||||||||||||||    
T  8145374 agaggaatgttatatatcaagaaagattttatc 8145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 23964531 - 23964499
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||||||||||||    
T  23964531 agagcaatgttatatatcaagaaagattttatc 23964499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 31078887 - 31078853
Alignment:
Q  218 ttagagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||| |||||||||||||||||||||||    
T  31078887 ttagagcaatgctatatatcaagaaagattttatc 31078853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 33530755 - 33530722
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||| |||||||||||||||||||||||    
T  33530755 tagagcaatgctatatatcaagaaagattttatc 33530722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 4751445 - 4751477
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  4751445 agagcaatgctatatatcaagaaagattttatc 4751477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 10442855 - 10442823
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  10442855 agagcaatgctatatatcaagaaagattttatc 10442823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 13354845 - 13354877
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||||||||||||    
T  13354845 agagcaatgttatatatcaagaaagattttatc 13354877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7475578 - 7475545
Alignment:
Q  216 atttagagcaatgttatatatcaagaaagatttt 249  Q
    ||||||||||||| ||||||||||||||||||||    
T  7475578 atttagagcaatgctatatatcaagaaagatttt 7475545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 35160755 - 35160788
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||| |||||||||||||||||||||||    
T  35160755 tagagcaatgctatatatcaagaaagattttatc 35160788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 9293642 - 9293610
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  9293642 agagcaatgctatatatcaagaaagattttatc 9293610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 14941433 - 14941401
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttat 251  Q
    |||||||||| ||||||||||||||||||||||    
T  14941433 tagagcaatgctatatatcaagaaagattttat 14941401  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 40262748 - 40262720
Alignment:
Q  224 caatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||||||||    
T  40262748 caatgttatatatcaagaaagattttatc 40262720  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 25973413 - 25973445
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||||||||||||||||    
T  25973413 agagcaatgttatatatcaagaaagattttatc 25973445  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 10167412 - 10167442
Alignment:
Q  218 ttagagcaatgttatatatcaagaaagattt 248  Q
    |||||||||||||||||||||||||||||||    
T  10167412 ttagagcaatgttatatatcaagaaagattt 10167442  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 18404441 - 18404473
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  18404441 agagcaatgctatatatcaagaaagattttatc 18404473  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 34519756 - 34519788
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttat 251  Q
    |||||||||| ||||||||||||||||||||||    
T  34519756 tagagcaatgctatatatcaagaaagattttat 34519788  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 51620978 - 51621010
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttat 251  Q
    |||||||||| ||||||||||||||||||||||    
T  51620978 tagagcaatgctatatatcaagaaagattttat 51621010  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 8320649 - 8320618
Alignment:
Q  221 gagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||||||||||||||||||||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatc 8320618  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 22426413 - 22426378
Alignment:
Q  217 tttagagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||||||||||||| |||||||||||||||    
T  22426413 tttagagcaatgttatatattaagaaagattttatc 22426378  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 42297351 - 42297384
Alignment:
Q  219 tagagcaatgttatatatcaagaaagattttatc 252  Q
    |||||||||| |||||||||||||||||||||||    
T  42297351 tagagcaatgctatatatcaagaaagattttatc 42297384  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 2754716 - 2754748
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  2754716 agagcaatgctatatatcaagaaagattttatc 2754748  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 3574593 - 3574561
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  3574593 agagcaatgctatatatcaagaaagattttatc 3574561  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 11347267 - 11347299
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  11347267 agagcaatgctatatatcaagaaagattttatc 11347299  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 33839530 - 33839562
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||||||||||| |||||||||||||||    
T  33839530 agagcaatgttatatattaagaaagattttatc 33839562  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 47402662 - 47402630
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  47402662 agagcaatgctatatatcaagaaagattttatc 47402630  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 41010 - 41042
Alignment:
Q  220 agagcaatgttatatatcaagaaagattttatc 252  Q
    ||||||||| |||||||||||||||||||||||    
T  41010 agagcaatgctatatatcaagaaagattttatc 41042  T

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