View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20697_low_3 (Length: 407)

Name: NF20697_low_3
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20697_low_3
NF20697_low_3
[»] chr6 (1 HSPs)
chr6 (28-73)||(7310463-7310508)
[»] chr2 (2 HSPs)
chr2 (21-95)||(11316258-11316331)
chr2 (38-88)||(32470300-32470350)
[»] chr8 (3 HSPs)
chr8 (324-377)||(22552201-22552254)
chr8 (38-75)||(32694264-32694301)
chr8 (38-75)||(32797491-32797528)
[»] chr5 (1 HSPs)
chr5 (38-75)||(30858248-30858285)
[»] chr3 (1 HSPs)
chr3 (28-73)||(38241246-38241291)
[»] scaffold0118 (1 HSPs)
scaffold0118 (38-75)||(42646-42683)
[»] chr4 (1 HSPs)
chr4 (175-203)||(33962309-33962337)


Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 7310463 - 7310508
Alignment:
Q  28 acaatagcagcaacaacatcgtcatcaattcaacagcaacatcatc 73  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  7310463 acaatagcagcaacaacaacatcatcaattcaacagcaacatcatc 7310508  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 11316258 - 11316331
Alignment:
Q  21 agattatacaatagcagcaacaacatcgtcatcaattcaacagcaacatcatcactagttatcaaaatgaaccat 95  Q
    |||||| ||||||||| |||||||| | |||||||||||||| |||||||||||| |  ||||||||| ||||||    
T  11316258 agattaaacaatagca-caacaacaacatcatcaattcaacaacaacatcatcaccatctatcaaaataaaccat 11316331  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 32470350 - 32470300
Alignment:
Q  38 caacaacatcgtcatcaattcaacagcaacatcatcactagttatcaaaat 88  Q
    |||||||||| |||||||||||||| |||||||||||| |  |||||||||    
T  32470350 caacaacatcatcatcaattcaacaacaacatcatcaccatctatcaaaat 32470300  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 22552201 - 22552254
Alignment:
Q  324 tccccttccaaccaccgcaacaaacgctgcagtcgcagtcgtaaccccaacgcc 377  Q
    ||||||||||||||||||||||||||  |  |||| ||||||||||||||||||    
T  22552201 tccccttccaaccaccgcaacaaacgtcgtcgtcgtagtcgtaaccccaacgcc 22552254  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 32694264 - 32694301
Alignment:
Q  38 caacaacatcgtcatcaattcaacagcaacatcatcac 75  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32694264 caacaacatcatcatcaattcaacagcaacatcatcac 32694301  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 32797491 - 32797528
Alignment:
Q  38 caacaacatcgtcatcaattcaacagcaacatcatcac 75  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32797491 caacaacatcatcatcaattcaacagcaacatcatcac 32797528  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 30858248 - 30858285
Alignment:
Q  38 caacaacatcgtcatcaattcaacagcaacatcatcac 75  Q
    |||||||||| |||||||||||||||||||||||||||    
T  30858248 caacaacatcatcatcaattcaacagcaacatcatcac 30858285  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 38241246 - 38241291
Alignment:
Q  28 acaatagcagcaacaacatcgtcatcaattcaacagcaacatcatc 73  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||    
T  38241246 acaatagcagcaacaacaacatcatcaattcaacaacaacatcatc 38241291  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 42646 - 42683
Alignment:
Q  38 caacaacatcgtcatcaattcaacagcaacatcatcac 75  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  42646 caacaacatcatcatcaattcaacaacaacatcatcac 42683  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 33962309 - 33962337
Alignment:
Q  175 aacaaatgctgcaatctcccccatttttt 203  Q
    |||||||||||||||||||||||||||||    
T  33962309 aacaaatgctgcaatctcccccatttttt 33962337  T

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