View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20697_low_5 (Length: 347)

Name: NF20697_low_5
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20697_low_5
NF20697_low_5
[»] chr6 (6 HSPs)
chr6 (18-333)||(1890717-1891032)
chr6 (161-316)||(1884090-1884245)
chr6 (205-333)||(1895567-1895695)
chr6 (225-318)||(1911038-1911131)
chr6 (205-310)||(1878084-1878189)
chr6 (228-311)||(1902000-1902083)
[»] chr2 (1 HSPs)
chr2 (262-311)||(11537528-11537577)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 1891032 - 1890717
Alignment:
Q  18 aaatgtaattgctaagtgtaagtttgaaatgacgatcagtttccaaaactgttttttgtcaaaatctcgatggtacagtgtgatgaacctgacaaattta 117  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1891032 aaatgtaattgctaagtgtaagtttcaaatcacgatgagtttccaaaactgttttttgtcaaaatcttgatggtacagtgtgatgaacctgacaaattta 1890933  T
Q  118 ccgtcaatctaaacatgtactaagttgttatatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngtgataggaagga 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  1890932 ccgtcaatctaaacatgtactaagttgttgtatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctaaaaaaagtgataggaagga 1890833  T
Q  218 gaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1890832 gaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaat 1890733  T
Q  318 agtttcctgtcctatg 333  Q
    ||||||||||||||||    
T  1890732 agtttcctgtcctatg 1890717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 1884245 - 1884090
Alignment:
Q  161 ttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatg 260  Q
    |||||||  |||||||||| |||||||||||||||||       |||||||||||||||| || |||  ||| |||||||||||||||||||||||||||    
T  1884245 ttctaacgtcgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatg 1884146  T
Q  261 attgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaa 316  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  1884145 attgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaa 1884090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 1895695 - 1895567
Alignment:
Q  205 gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta 304  Q
    |||| |||||| |||| || |||||||| |||||||| ||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||    
T  1895695 gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta 1895596  T
Q  305 aagccatttcaatagtttcctgtcctatg 333  Q
    |||||||||||||||||||||||||||||    
T  1895595 aagccatttcaatagtttcctgtcctatg 1895567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 1911131 - 1911038
Alignment:
Q  225 agtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaata 318  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  1911131 agtaccaacagcataagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaata 1911038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 1878189 - 1878084
Alignment:
Q  205 gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta 304  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||| | ||| ||| ||    
T  1878189 gtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgacta 1878090  T
Q  305 aagcca 310  Q
    ||||||    
T  1878089 aagcca 1878084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 1902083 - 1902000
Alignment:
Q  228 accaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat 311  Q
    ||||| |||||||||||| |||| ||||||||| ||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  1902083 accaacagcataagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccat 1902000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
Q  262 ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat 311  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||| ||||    
T  11537577 ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat 11537528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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