View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20697_low_6 (Length: 316)

Name: NF20697_low_6
Description: NF20697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20697_low_6
NF20697_low_6
[»] chr8 (1 HSPs)
chr8 (23-212)||(30926955-30927145)
[»] scaffold0003 (1 HSPs)
scaffold0003 (209-307)||(39837-39935)
[»] chr6 (1 HSPs)
chr6 (209-307)||(27447423-27447521)
[»] chr5 (3 HSPs)
chr5 (124-210)||(5404446-5404532)
chr5 (206-304)||(5404577-5404675)
chr5 (23-94)||(5404263-5404334)
[»] chr4 (4 HSPs)
chr4 (206-304)||(2468770-2468868)
chr4 (23-120)||(52491044-52491141)
chr4 (124-198)||(2468639-2468713)
chr4 (216-304)||(52490886-52490974)
[»] chr2 (1 HSPs)
chr2 (146-184)||(3085346-3085384)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 30927145 - 30926955
Alignment:
Q  23 tcgtgtgttgatgagcgcacctctctccggtgaccttctttcaaagtacaacgtgcattctcttcccgttcgtaaggaggaagaaattcaggctgtgaag 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  30927145 tcgtgtgttgatgagcgaacctctctccggtgaccttctttcaaagtacaacgtgcattctcttcccgttcgtaaggaggatgaagttcaggttgtgaag 30927046  T
Q  123 gg-aaggttaatggtcaaactgtgaatgttggtgttaatccttcaaaggttgtgattactaagattcgtttggataatgatagaaaaaggg 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30927045 ggaaaggttaatggtcaaactgtgaatgttggtgttaatccttcaaaggttgtgattactaagattcgtttggataatgataggaaaaggg 30926955  T

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Target: scaffold0003 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 39935 - 39837
Alignment:
Q  209 agggtaccaagtttgcttctgaagacattatgcaaaacgcttattagtttaatcatattactactcttggttgtattgttactagaaattgattttctt 307  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||    
T  39935 agggtaccaagtttgctcctgaagacattatgcaaaacgttgattagtttaattatattattacttttggttgtattgttactagaacttgattttctt 39837  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 27447423 - 27447521
Alignment:
Q  209 agggtaccaagtttgcttctgaagacattatgcaaaacgcttattagtttaatcatattactactcttggttgtattgttactagaaattgattttctt 307  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||    
T  27447423 agggtaccaagtttgctcctgaagacattatgcaaaacgttgattagtttaattatattattacttttggttgtattgttactagaacttgattttctt 27447521  T

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Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 5404446 - 5404532
Alignment:
Q  124 gaaggttaatggtcaaactgtgaatgttggtgttaatccttcaaaggttgtgattactaagattcgtttggataatgatagaaaaag 210  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  5404446 gaaggtgaatggtcaaactgtgaatgttggtgttgatccttcaaaggttgtgattactaagattcgtttggacaaggataggaaaag 5404532  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 5404577 - 5404675
Alignment:
Q  206 aaaagggtaccaagtttgcttctgaagacattatgcaaaacgcttattagtttaatcatattactactcttggttgtattgttactagaaattgatttt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  5404577 aaaagggtaccaagtttgctcctgaagacattatgcaaaacgttgattaatttaatcctattattacttttggttgtattgttactagaacttgatttt 5404675  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 5404263 - 5404334
Alignment:
Q  23 tcgtgtgttgatgagcgcacctctctccggtgaccttctttcaaagtacaacgtgcattctcttcccgttcg 94  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||    
T  5404263 tcgtgtgttgatgagcgcacctctttccggtgacctccgttcaaagtacaacgtgcgttctcttcccgttcg 5404334  T

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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 2468770 - 2468868
Alignment:
Q  206 aaaagggtaccaagtttgcttctgaagacattatgcaaaacgcttattagtttaatcatattactactcttggttgtattgttactagaaattgatttt 304  Q
    ||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||| |||||| ||||||||    
T  2468770 aaaagggtaccaagttttctcctgaagacattatgcaaaacgttgattagtttaatcatattattacttttggttgtattgtttctagaatttgatttt 2468868  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 52491141 - 52491044
Alignment:
Q  23 tcgtgtgttgatgagcgcacctctctccggtgaccttctttcaaagtacaacgtgcattctcttcccgttcgtaaggaggaagaaattcaggctgtga 120  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||| |||||| |||||    
T  52491141 tcgtgtgttgattagcgcacctctctctggtgaccttcgttcaaagtacatcgtgcgttctcttcccgttcgtaaggaggatgaagttcaggttgtga 52491044  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 2468639 - 2468713
Alignment:
Q  124 gaaggttaatggtcaaactgtgaatgttggtgttaatccttcaaaggttgtgattactaagattcgtttggataa 198  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2468639 gaaggttaatggtcaaactgtgaatattggtgttaatccttcgaaggttgtgattactaagattcgtttgcataa 2468713  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 52490974 - 52490886
Alignment:
Q  216 caagtttgcttctgaagacattatgcaaaacgcttattagtttaatcatattactactcttggttgtattgttactagaaattgatttt 304  Q
    |||||||||||||||||||||||||| ||| | | |||||||||||||||||| |||| ||| ||||||||||||||||| || |||||    
T  52490974 caagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgttactagaatttcatttt 52490886  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 3085384 - 3085346
Alignment:
Q  146 aatgttggtgttaatccttcaaaggttgtgattactaag 184  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  3085384 aatgttggtgttaatccttcaaaggttgttatcactaag 3085346  T

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