View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_high_13 (Length: 262)
Name: NF20698_high_13
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 51741158 - 51740922
Alignment:
| Q |
15 |
tcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaactgtgagaaaccagggaccttagacatccctcttt |
114 |
Q |
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| T |
51741158 |
tcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaattgtgagaaaccagggaccttagacatccctcttt |
51741059 |
T |
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| Q |
115 |
cgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaattcgttg |
214 |
Q |
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| T |
51741058 |
cgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaattcgttg |
51740959 |
T |
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| Q |
215 |
atgcttgtgaaaaggaagaaggataattgatacttga |
251 |
Q |
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| T |
51740958 |
atgcttgtgaaaaggaagaaggataattgatacttga |
51740922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 10201863 - 10201720
Alignment:
| Q |
108 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaa |
207 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||||| | |
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| T |
10201863 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcga |
10201764 |
T |
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| Q |
208 |
ttcgttgatgcttgtgaaaaggaagaaggataattgatacttga |
251 |
Q |
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| T |
10201763 |
ttcgttgatgcttgtgaaagggaagaagaataatcgatacttga |
10201720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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