View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_high_5 (Length: 310)
Name: NF20698_high_5
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42187147 - 42187371
Alignment:
| Q |
1 |
tttcagtctatgattggtcattgtattggtgctgctggtgctttggaagctataacaaccatcaaagcaataacaactggctggttacatccaaccatta |
100 |
Q |
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| T |
42187147 |
tttcagtcaatgattggtcattgtattggtgctgctggtgctttggaagctataacaaccatcaaagcaataacaactggctggttacatccaaccatta |
42187246 |
T |
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| Q |
101 |
accaagatgtattgtcttgaccgctaaattaacaacttaatcaagcatttaagtataagatatatttttgttcaaaacaaaaagtataagatatatttaa |
200 |
Q |
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| T |
42187247 |
accaagatgtattgtcttgaccgctaaattaacaacttaaccaagcatttaagtataagatatatttttgttcaaaacaaaaagtataagatatatttaa |
42187346 |
T |
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| Q |
201 |
aacgaaagataagattaaattaaac |
225 |
Q |
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| T |
42187347 |
aacgaaagctaagattaaattaaac |
42187371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 42204198 - 42204308
Alignment:
| Q |
1 |
tttcagtctatgattggtcattgtattggtgctgctggtgctttggaagctataacaaccatcaaagcaataacaactggctggttacatccaaccatta |
100 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42204198 |
tttcagtcaattattggtcattgtattggtgctgctggtgctttggaagctataacaaccatcaaagcaataacaactggctggttgcatccaaccatta |
42204297 |
T |
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| Q |
101 |
accaagatgta |
111 |
Q |
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| T |
42204298 |
accaagatgta |
42204308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 42196946 - 42197107
Alignment:
| Q |
1 |
tttcagtctatgattggtcattgtattggtgctgctggtgctttggaagctataacaaccatcaaagcaataacaactggctggttacatccaaccatta |
100 |
Q |
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|||||||| ||||||||||||| | ||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
42196946 |
tttcagtcaatgattggtcattctcttggtgctgctggtggtttggaagctatagcaactatcaaagcaataacatctggatggttgcatccaaccatta |
42197045 |
T |
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| Q |
101 |
accaagatgtattgtcttgaccgctaaatta---acaacttaatcaagcatttaagtataag |
159 |
Q |
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| T |
42197046 |
accaagatgtactgtcttgaccatgaaactaactacaacttaatcaagcatttatgtataag |
42197107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 42187407 - 42187465
Alignment:
| Q |
235 |
tataagatattatctagaccttatagaaataagcttaaaataatctcacaactacttat |
293 |
Q |
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| T |
42187407 |
tataagatataatctagaccttatagaaataagcttaaaataatctcacaactacttat |
42187465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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