View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_low_1 (Length: 535)
Name: NF20698_low_1
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 4996597 - 4996055
Alignment:
| Q |
1 |
aagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgaata |
100 |
Q |
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| T |
4996597 |
aagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaaagttgaaaaagtgatta |
4996498 |
T |
|
| Q |
101 |
cttgaaagcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaaggggtaaagcattattacttccagaaga |
200 |
Q |
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| T |
4996497 |
cttgaaatcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaaggggtaaagcattattacttccagaaga |
4996398 |
T |
|
| Q |
201 |
agaatcattcttggggataggataaggttaagaaatttggacaacctatgaaatttgtatagtactagagagagatgtgaaacattttggagatgatttg |
300 |
Q |
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| T |
4996397 |
agaatcattcttggggataggataaggttaagaaatttggacaacctatgaaatttgtatagtactagagagagatgtgaaacattttggagatgatttg |
4996298 |
T |
|
| Q |
301 |
atgaacatgttgactatgttattgtctctttgtttgtgatttttgta-------------ataggtggctacagtaagaatattttgcttaggagaataa |
387 |
Q |
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| T |
4996297 |
atgaacatgttgactatgttattgtctctttgtttgtgatttttgtaatagagctatagtataggtggctacagtaagaatattttgcttaggagaataa |
4996198 |
T |
|
| Q |
388 |
ggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactctaatctatttcaatttccaaccactaatgcagcatggtagattttgaaaga |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4996197 |
ggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactctaatctatttcaatttccaaccactaatgcagcatggtagattttgaaaga |
4996098 |
T |
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| Q |
488 |
aaagaaacaaaagttaatggttggaaagattctgttccctttg |
530 |
Q |
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| T |
4996097 |
aaagaaacaaaagttaatggttggaaagaatctgttccctttg |
4996055 |
T |
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