View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20698_low_12 (Length: 267)

Name: NF20698_low_12
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20698_low_12
NF20698_low_12
[»] chr1 (21 HSPs)
chr1 (1-250)||(35194604-35194854)
chr1 (24-172)||(35206450-35206597)
chr1 (24-172)||(35216997-35217144)
chr1 (25-196)||(35213584-35213754)
chr1 (39-114)||(35145310-35145385)
chr1 (204-250)||(35200043-35200089)
chr1 (204-250)||(35263122-35263168)
chr1 (203-250)||(35248381-35248428)
chr1 (204-246)||(35147470-35147512)
chr1 (204-250)||(35270547-35270593)
chr1 (204-250)||(35276645-35276691)
chr1 (205-250)||(35208244-35208289)
chr1 (45-105)||(45526295-45526355)
chr1 (204-250)||(35189422-35189468)
chr1 (204-250)||(35212077-35212123)
chr1 (204-250)||(35295867-35295913)
chr1 (204-251)||(35225023-35225070)
chr1 (204-250)||(35190474-35190520)
chr1 (204-246)||(45525579-45525621)
chr1 (206-250)||(8639012-8639056)
chr1 (204-248)||(35476415-35476459)
[»] chr3 (3 HSPs)
chr3 (206-250)||(899766-899810)
chr3 (204-239)||(23331914-23331949)
chr3 (206-245)||(53924276-53924315)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 35194854 - 35194604
Alignment:
Q  1 ttcaaaacataaggcgaatgtggtattttttacagcttcatacgaatgctcaattgattgatgtaaaatatat--tgtgatttttgaaatgtttagttca 98  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  35194854 ttcaaaacata-ggtgaatgtggtattttttacagcttcatacgaatgctcaattgattgatgtaaaatatatattgtgatttttgatatgtttagttca 35194756  T
Q  99 gactgctgacaataagtcttgaattagtttgaaatgcagagttttcaattggacaaaagaagtggaaaaaagtggtatgtgattgctactaaatctctaa 198  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  35194755 gaatgctgacaataagtcttgaattagtttgaaatgcagagttttcaattggacaaaagaagtggaaaaaagtggcatgtgattgctgctaaatctctaa 35194656  T
Q  199 ccatttgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35194655 ccatttgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 35194604  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 35206597 - 35206450
Alignment:
Q  24 tattttttacagcttcatacgaatgctcaattgattgatgtaaaatatattgtgatttttgaaatgtttagttcagactgctgacaataag-tcttgaat 122  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| | |||| | |||||| | | |||     
T  35206597 tattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaataataagctttggaaa 35206498  T
Q  123 tagtttgaaatgcagagttttcaattggacaaaagaagtggaaaaaagtg 172  Q
    ||  |||||||||||||||| |||||||| | ||  ||||||||||||||    
T  35206497 ta--ttgaaatgcagagtttccaattggatagaaagagtggaaaaaagtg 35206450  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 35217144 - 35216997
Alignment:
Q  24 tattttttacagcttcatacgaatgctcaattgattgatgtaaaatatattgtgatttttgaaatgtttagttcagactgctgacaataag-tcttgaat 122  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| | |||| | |||||| | | |||     
T  35217144 tattttctacagctacatacgaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcaaaatgctaataataagctttggaaa 35217045  T
Q  123 tagtttgaaatgcagagttttcaattggacaaaagaagtggaaaaaagtg 172  Q
    ||  |||||||||||||||| |||||||| | ||  ||||||||||||||    
T  35217044 ta--ttgaaatgcagagtttccaattggatagaaagagtggaaaaaagtg 35216997  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 35213754 - 35213584
Alignment:
Q  25 attttttacagcttcatacgaatgctcaattgattgatgtaaaatatattgtgatttttgaaatgtttagttcagactgctgacaat-aagtcttgaatt 123  Q
    ||||| |||| || |||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||| |||| | ||| || | | ||| |    
T  35213754 attttctacatctacatacgaatgctcagttgattgttataaaatatattgtgatttttgaaatgcttagttcagaatgctaataataaactttggaaat 35213655  T
Q  124 agtttgaaatgcagagttttcaattggacaaaagaagtggaaaaaagtggtatgtgattgctactaaatctct 196  Q
    |  ||||||||||||| ||||||||||| | || |||||||||||| || ||| || ||||| ||| ||||||    
T  35213654 a--ttgaaatgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctct 35213584  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 35145385 - 35145310
Alignment:
Q  39 catacgaatgctcaattgattgatgtaaaatatattgtgatttttgaaatgtttagttcagactgctgacaataag 114  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||| | ||||||    
T  35145385 cataagaatgctcaattgattgttgtaaaatatattgtgatttttgaaatgcttaattcagaatgctaataataag 35145310  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35200089 - 35200043
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  35200089 tgtgagaagcgatgggtggttggagattgaaatcggggagttcttca 35200043  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35263168 - 35263122
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35263168 tgtgagaagcgatgggtggttggagattgagatgggggagttcttca 35263122  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 35248428 - 35248381
Alignment:
Q  203 ttgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  35248428 ttgtgagaagcgatgggtggtttgagattgagatgggggagttcttca 35248381  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 35147512 - 35147470
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttc 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  35147512 tgtgagaagcgatgggtggttggagattgagatgggggagttc 35147470  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35270593 - 35270547
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  35270593 tgtgagaagtgatgggtggttggagattgagatgggggagttcttca 35270547  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35276691 - 35276645
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  35276691 tgtgagaagagatgggtggttggagattgagatgggggagttcttca 35276645  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 35208289 - 35208244
Alignment:
Q  205 gtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||||||||||||||||||||||| || |||||||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagattggggagttcttca 35208244  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 45526355 - 45526295
Alignment:
Q  45 aatgctcaattgattgatgtaaaatatattgtgatttttgaaatgtttagttcagactgct 105  Q
    |||||||||||||||| |||||||||||| || |||||| ||||| |||||||||| ||||    
T  45526355 aatgctcaattgattgttgtaaaatatatggttattttttaaatgcttagttcagaatgct 45526295  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35189468 - 35189422
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  35189468 tgtgagaagtgataggtggttggagattggaatgggggagttcttca 35189422  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35212123 - 35212077
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  35212123 tgtgagaagtgatgggtggttggagattgagatgggagagttcttca 35212077  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 35295867 - 35295913
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  35295867 tgtgagaagtgatgggtggttggagattgagatgggagagttcttca 35295913  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 35225070 - 35225023
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttcat 251  Q
    ||||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  35225070 tgtgagaagcgatggctggttagagattgagatgggagagttcttcat 35225023  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35190520 - 35190474
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||||| |||||||||||||||||||| || || ||||||||||    
T  35190520 tgtgagaagtgatgggtggttggagattgagatcggagagttcttca 35190474  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 45525621 - 45525579
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttc 246  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||    
T  45525621 tgtgagaagtgatgggtggttggagattgagatgggagagttc 45525579  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 8639056 - 8639012
Alignment:
Q  206 tgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    ||||||| |||||||||||||||| ||| ||||| ||||||||||    
T  8639056 tgagaagtgatgggtggttggagactgagatgggagagttcttca 8639012  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 35476459 - 35476415
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatgggggagttctt 248  Q
    ||||||| | |||||||||||||||||||| ||||| ||||||||    
T  35476459 tgtgagacgtgatgggtggttggagattgagatgggagagttctt 35476415  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 899766 - 899810
Alignment:
Q  206 tgagaagcgatgggtggttggagattgaaatgggggagttcttca 250  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  899766 tgagaagcgatgggtggttggagattgagatgggagagttattca 899810  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 23331949 - 23331914
Alignment:
Q  204 tgtgagaagcgatgggtggttggagattgaaatggg 239  Q
    |||||||||||||||||||||||||||||| |||||    
T  23331949 tgtgagaagcgatgggtggttggagattgagatggg 23331914  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 53924276 - 53924315
Alignment:
Q  206 tgagaagcgatgggtggttggagattgaaatgggggagtt 245  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  53924276 tgaggagcgatgggtggttggagattgagatgggggagtt 53924315  T

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