View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_low_14 (Length: 248)
Name: NF20698_low_14
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 8957825 - 8958068
Alignment:
| Q |
1 |
aaatgttacaaacatatacttttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataac |
100 |
Q |
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| T |
8957825 |
aaatgttacaaacatatacttttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataac |
8957924 |
T |
|
| Q |
101 |
tctaaaaactctacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957925 |
tctaaaaactctacttcaaaagcaagcatgtctttcatgaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggcctt |
8958024 |
T |
|
| Q |
201 |
caaatagttgtccatatattttgaaacctgacatctctgctcct |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8958025 |
caaatagttgtccatatattttgaaacctgacatcactgctcct |
8958068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 8946129 - 8946009
Alignment:
| Q |
114 |
cttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtcc |
213 |
Q |
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|||||| ||||| |||||||||||| | || ||||||||| ||||||||||||| |||||| |||| |||||| ||||| || |||||||||||||| |
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| T |
8946129 |
cttcaatagcaaatatgtctttcaagttatcaatttttggaactaaaccagcacctggtgtttactcttctagttcgagaggaccatcaaatagttgtcc |
8946030 |
T |
|
| Q |
214 |
atatattttgaaacctgacat |
234 |
Q |
| |
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|||| | |||||||||||||| |
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| T |
8946029 |
atatgtcttgaaacctgacat |
8946009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 8962945 - 8963072
Alignment:
| Q |
107 |
aactctacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaata |
206 |
Q |
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||||||| ||||| || || ||||||||||||| ||| |||||| |||||||| |||||| || || ||||||||| |||||||| ||||| | |
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| T |
8962945 |
aactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttttatagttctagagggccatcaaaga |
8963044 |
T |
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| Q |
207 |
gttgtccatatattttgaaacctgacat |
234 |
Q |
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||||||||||| | |||||||||||||| |
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| T |
8963045 |
gttgtccatatgtgttgaaacctgacat |
8963072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 34963005 - 34962792
Alignment:
| Q |
12 |
acatatacttttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactc |
111 |
Q |
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|||||| || |||| |||||||||||||| ||||| ||||| ||||||| ||||| ||| | ||||||||||||||||||||| |||||||| |
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| T |
34963005 |
acatattctattcacaaaatagttttgcaaccatccttgttaatccaataaatggtgaaattgtcaaagcttacatcaagagtagtaactcta------- |
34962913 |
T |
|
| Q |
112 |
tacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgt |
211 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||| |
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| T |
34962912 |
--cttcaattgcaagcatgtctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgt |
34962815 |
T |
|
| Q |
212 |
ccatatattttgaaacctgacat |
234 |
Q |
| |
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|||| | | |||||||||||||| |
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| T |
34962814 |
ccatttgtgttgaaacctgacat |
34962792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 21687374 - 21687162
Alignment:
| Q |
29 |
aatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagca |
128 |
Q |
| |
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|||||||| ||||||||||| || ||||| | ||||||||| | || |||||||||||||||||| |||||||||| | ||| ||||| ||||| || |
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| T |
21687374 |
aatagtttcccatccatcattattaatccagtaaatggagaaattgtgaaagcttacatcaagagtcataactctaa---cgctagttcaatagcaaaca |
21687278 |
T |
|
| Q |
129 |
tgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacc |
228 |
Q |
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|||||||||||||||||| ||| || ||||| || |||||||||| || |||||| ||||| || || |||||||||||||||||| | |||||||| |
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| T |
21687277 |
tgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacc |
21687178 |
T |
|
| Q |
229 |
tgacatctctgctcct |
244 |
Q |
| |
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||||||| |||||||| |
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| T |
21687177 |
tgacatcactgctcct |
21687162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 19375998 - 19375878
Alignment:
| Q |
122 |
gcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattt |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| | | | |
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| T |
19375998 |
gcaagcatgtctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgt |
19375899 |
T |
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| Q |
222 |
tgaaacctgacatctctgctc |
242 |
Q |
| |
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||||||| |||||| |||||| |
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| T |
19375898 |
tgaaacccgacatcactgctc |
19375878 |
T |
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