View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_low_15 (Length: 244)
Name: NF20698_low_15
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 39681625 - 39681399
Alignment:
| Q |
18 |
atcgcatttctccatcttcgctttctttccttggaaatcaaccaccaattcacgacaacatggtaagtcactctttctttcttaattccaccacaaaaca |
117 |
Q |
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| T |
39681625 |
atcgcatttctccatcttcgctttctttccttgaaaatcaaccaccaattcacgacaacatggtaagtcactctttctttcttaattccaccacaaaaca |
39681526 |
T |
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| Q |
118 |
acgatttggttgaatcattacctagatcgcatcaacttcactctttcttctcaaatatgtaatcttttttacgtttctgctttttaatgataccaatatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39681525 |
acgatttggttgaatcattacctagatcgcatcaacttcactcttttttctcaaatatgtaatcttttttacgtttctgctttttaatgataccaatatg |
39681426 |
T |
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| Q |
218 |
tttagggttagggttagagttccattc |
244 |
Q |
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| T |
39681425 |
tttagggttagggttagagttccattc |
39681399 |
T |
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