View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_low_16 (Length: 236)
Name: NF20698_low_16
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8957743 - 8957523
Alignment:
| Q |
1 |
cacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttattggaagaaaatgttcctatat |
100 |
Q |
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| T |
8957743 |
cacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttattggaagaaaatgttcctatat |
8957644 |
T |
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| Q |
101 |
aacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgt |
200 |
Q |
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| T |
8957643 |
aacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccttgaaattctctatccatagttccagcagccacagttatgacccaaggtgt |
8957544 |
T |
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| Q |
201 |
tccattgtgaagagtttcaag |
221 |
Q |
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| T |
8957543 |
tccattgtgaagagtttcaag |
8957523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 8946459 - 8946549
Alignment:
| Q |
127 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagttt |
217 |
Q |
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| T |
8946459 |
ccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattgcgaagagttt |
8946549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 8946339 - 8946403
Alignment:
| Q |
7 |
acaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattgg |
71 |
Q |
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| T |
8946339 |
acaatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattgg |
8946403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 8962631 - 8962543
Alignment:
| Q |
127 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagt |
215 |
Q |
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| T |
8962631 |
ccattaccaagtgtaagattcccaaaaaattcacgatctaaagtactagcagcaacagttatcacccatggtattccattgtgaagagt |
8962543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 34963106 - 34963306
Alignment:
| Q |
9 |
aatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttattggaagaaaatgttcctatataacgtgac |
108 |
Q |
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| T |
34963106 |
aatcttgcttttcacttttttcaattcataaacattgttacataaatccatgaaaacaattggaacatcttgtgtagacaatgttcctacataaagagac |
34963205 |
T |
|
| Q |
109 |
aaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgt |
208 |
Q |
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| T |
34963206 |
aatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagttataacccaaggtgttccattgt |
34963305 |
T |
|
| Q |
209 |
g |
209 |
Q |
| |
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| |
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|
| T |
34963306 |
g |
34963306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 25928181 - 25928102
Alignment:
| Q |
1 |
cacacaacaatcttgtttttcac-ttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttat |
79 |
Q |
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||||| ||||||||| |||| || ||||||||| |||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
25928181 |
cacaccacaatcttggtttttacgttttttcaactccttaacattgtcgcataaacccataaaaacaataggaacattat |
25928102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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