View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20698_low_2 (Length: 382)
Name: NF20698_low_2
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 51740717 - 51740358
Alignment:
| Q |
15 |
ttcacaagctcacttaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgag |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740717 |
ttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgag |
51740618 |
T |
|
| Q |
115 |
gatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740617 |
gatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctag |
51740518 |
T |
|
| Q |
215 |
aaaagacacaataattcctgatattattgtgttaagtactattgctactagcacaatgttgcaatcttctgcatttaaatcctgtatatacaataataac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740517 |
aaaagacacaataattcctgatattattgtgttaagtactattgctactagcacaacgttgcaatcttctgcatttaaatcctgtatatacaataataac |
51740418 |
T |
|
| Q |
315 |
caaattaagagttatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
374 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740417 |
caaattaagagtaatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
51740358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 10201512 - 10201260
Alignment:
| Q |
15 |
ttcacaagctcacttaggtgcattaaataagtggttgaaggtgatgttttagatccatgcattgctagtattgttgcaagtattgatgatacttgacgag |
114 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| | |||||||| |||| |
|
|
| T |
10201512 |
ttcacaagctctattaagtgcattaaataagtggtggaaggtgatgttttagagccatgtattgctagtattgtggctagtatcgcagatacttgtcgag |
10201413 |
T |
|
| Q |
115 |
gatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctcttcccctcttgctag |
214 |
Q |
| |
|
||||||| ||||||||||||||| ||| || |||||||| |||||||||||||| | ||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
10201412 |
gatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgtttgaaaacattttctcttccccctttgctat |
10201313 |
T |
|
| Q |
215 |
aaaagacacaataattcctgatattattgtgttaagtactattgctactagca |
267 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| | |||||| | |||||||| |
|
|
| T |
10201312 |
aaacgacacaattattcctgatattattgtgtttaatactatcgatactagca |
10201260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University