View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_low_3 (Length: 381)
Name: NF20698_low_3
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 14147115 - 14147477
Alignment:
| Q |
1 |
tgactgataagttgtttcttagtatgtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147115 |
tgactgataagttgtttcttagtatgtttataaaacgttttgagaatgaggcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagat |
14147214 |
T |
|
| Q |
101 |
cagggacaagacatgcatgtcatgattaggttttcatgtcttttagactgaatatgttattcttgttccatattctatttgaaatgtatttggtacagcc |
200 |
Q |
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| T |
14147215 |
cagggacaagacatgcatgtcatgattaggttttcatgtcttttagactgaatatgttattcttgttccatattctatttgaaatgtatttggtatagca |
14147314 |
T |
|
| Q |
201 |
gactgtgattcaatctaatttcgctttgcttagtttgacaaatgctggttttgtattgattgatatttcttcaaaatcttattgtttatcagtcttaata |
300 |
Q |
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| T |
14147315 |
gactgtgattcaatctaa-ttagctttgcttagtttgacaaatgctggttttgtattgattgatatttcttcaaaatcttattgtttatcagtcttaata |
14147413 |
T |
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| Q |
301 |
acatcaaacattttctagtactacgtgtgaaaatttaattttctagcattcatgggcatggaat |
364 |
Q |
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| T |
14147414 |
acatcaaacattttctagtactacgtgtgaaaatttaattttctagcattcatgggcatggaat |
14147477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 14153584 - 14153945
Alignment:
| Q |
1 |
tgactgataagttgtttcttagtatgtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagat |
100 |
Q |
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| T |
14153584 |
tgactgataagttgtttcttaatatgtttataaaacgttttgagaatgaggcttcttatcttttaaagttgtatgaggaaaaatgcaatctaggatagac |
14153683 |
T |
|
| Q |
101 |
cagggacaagacatgcatgtcatgattaggttttcatgtcttttagactgaatatgttattcttgttccatattctatttgaaatgtatttggtacagcc |
200 |
Q |
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| T |
14153684 |
cagggacaagacattcatgtcatgattagtttttcatgtcttttagactgaatatgttattcttgttccatattctatttgaaatgtgtttggtaca--- |
14153780 |
T |
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| Q |
201 |
gactgtgattcaatctaatttcgctttgcttagtttgacaaatgctggttttgtattgattgatatttcttcaaaatctt-attgtttatcagtcttaat |
299 |
Q |
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| T |
14153781 |
gactgtgattcaatctaatttagctatgcttaatttgataaattctagttttgtattgattgatatttcatcaaaatcttaattgtttatcagtcttaac |
14153880 |
T |
|
| Q |
300 |
aacatcaaacattttctagtactacgtgtgaaaatttaattttctagcattcatgggcatggaat |
364 |
Q |
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| T |
14153881 |
aacatcaaatatttttcagtactacatgtaaaaatttaattttctagcatttatgggcatggaat |
14153945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 14495385 - 14495691
Alignment:
| Q |
2 |
gactgataagttgtttcttagtatgtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagatc |
101 |
Q |
| |
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|||||| |||||||||||| |||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||| ||| || | | | | |
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| T |
14495385 |
gactgaaaagttgtttcttgatatgtttataaaacgttttaagaatgagtcttcttatcttataaagttgtatgaggaaaaactcaagcttgcccacacc |
14495484 |
T |
|
| Q |
102 |
agggacaagacatgcatgtcatgattaggttttcatgtcttttagactgaatatgttattcttgttccatattctatttgaaatgtatttggtacagcc- |
200 |
Q |
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| T |
14495485 |
aaggaaaagacatgagtatcatgactaggtttttaggtcttttagacttgatatgttattattgttccatattctatttgaaatttgtttggtacagata |
14495584 |
T |
|
| Q |
201 |
gactgtgattcaatctaatttcgctttgcttagtttgacaaatgctggttttgtattgattgatatttcttcaaaatcttattgtttatcagtcttaata |
300 |
Q |
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|| | || || ||||||||| |||||| || |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14495585 |
gattatgtttggatctaatttagctttgtttcgtttgacaaatgttggtttcttattgatcataatttcttcaaaatcttattgtttatcagtcttaata |
14495684 |
T |
|
| Q |
301 |
acatcaa |
307 |
Q |
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||||||| |
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| T |
14495685 |
acatcaa |
14495691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 14480658 - 14480517
Alignment:
| Q |
26 |
gtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagatcagggacaagacatgcatgtcatga |
125 |
Q |
| |
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|||||||||||||||||||||||| |||||| || | |||||| |||| ||||| |||| |||||| | ||| | |||||||| || |||||||||||| |
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| T |
14480658 |
gtttataaaacattttgagaatgaggcttctaatatgttaaagctgtacgaggacaaactcaatcttgcatacactagggacaaaacttgcatgtcatga |
14480559 |
T |
|
| Q |
126 |
ttaggttttcatgtcttttagactgaatatgttattcttgtt |
167 |
Q |
| |
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|||| |||||| || |||||| || ||||||| |||| |||| |
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| T |
14480558 |
ttagattttcaagtattttagccttaatatgtgattcatgtt |
14480517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 14530031 - 14530153
Alignment:
| Q |
24 |
atgtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagatcagggacaagacatgcatgtcat |
123 |
Q |
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||||||| | ||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||| | ||| | || |||| | ||||||||||||| |
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| T |
14530031 |
atgtttagagaacattttgagcatgaggcttcttatcttttaaagttgtatgagaaaaaacacaatcatgtatacaccacggactaaacatgcatgtcat |
14530130 |
T |
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| Q |
124 |
gattaggttttcatgtcttttag |
146 |
Q |
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||||| |||||| || |||||| |
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| T |
14530131 |
gattatattttcaggtattttag |
14530153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 14502874 - 14502961
Alignment:
| Q |
4 |
ctgataagttgtttcttagtatgtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatct |
91 |
Q |
| |
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|||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||| || ||||||| |||||| |
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| T |
14502874 |
ctgagaagttgtttcttgatatgtttataaaacgttttgagaatgcggcttcttatcttttaaagctgtacgaagaaaaactcaatct |
14502961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 14507497 - 14507590
Alignment:
| Q |
4 |
ctgataagttgtttcttagtatgtttataaaacattttgagaatgaagcttcttatcttttaaagttgtatgaggaaaaacgcaatctaggata |
97 |
Q |
| |
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| T |
14507497 |
ctgagaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaaactcaaccttggata |
14507590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 14475447 - 14475353
Alignment:
| Q |
52 |
cttcttatcttttaaagttgtatgaggaaaaacgcaatctaggatagatcagggacaagacatgcatgtcatgattaggttttcatgtcttttag |
146 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||| | || | || |||||| ||||||| |||||||||| |||||| || |||||| |
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| T |
14475447 |
cttcttatctattaaagttgtatgaggaaaaactcaatcttgcttacaccatggacaaaacatgcacatcatgattagattttcaggtattttag |
14475353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 14513413 - 14513490
Alignment:
| Q |
57 |
tatcttttaaagttgtatgaggaaaaacgcaatctaggatagatcagggacaagacatgcatgtcatgattaggtttt |
134 |
Q |
| |
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||||| ||||||||||||| |||||||| ||| || | ||| | | ||||||| ||||||||||||| ||||| |||| |
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| T |
14513413 |
tatctattaaagttgtatgtggaaaaactcaaccttgcatacacctgggacaaaacatgcatgtcataattagatttt |
14513490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 9812743 - 9812675
Alignment:
| Q |
76 |
aggaaaaacgcaatctaggatagatcagggacaagacatgca--tgtcatgattaggttttcatgtctt |
142 |
Q |
| |
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|||||||||||||||| ||||| | ||||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
9812743 |
aggaaaaacgcaatcttggatacaccagggacaagacatgcacgtgtcgtgattaggttttgatgtctt |
9812675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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