View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20698_low_7 (Length: 301)

Name: NF20698_low_7
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20698_low_7
NF20698_low_7
[»] chr2 (4 HSPs)
chr2 (13-161)||(16950960-16951108)
chr2 (13-161)||(17021625-17021773)
chr2 (224-287)||(16950834-16950897)
chr2 (224-287)||(17021499-17021562)
[»] chr3 (3 HSPs)
chr3 (224-287)||(31328440-31328503)
chr3 (224-287)||(42773258-42773321)
chr3 (224-287)||(53747549-53747612)
[»] chr8 (1 HSPs)
chr8 (224-287)||(14184926-14184989)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 16951108 - 16950960
Alignment:
Q  13 cataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatgac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16951108 cataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatgac 16951009  T
Q  113 attgccatttgtgagcttcaatggttactttttctactagcttacgcca 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16951008 attgccatttgtgagcttcaatggttactttttctactagcttacgcca 16950960  T

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Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 17021773 - 17021625
Alignment:
Q  13 cataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatgac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17021773 cataggggaagaattgcaaagaggctgaagaaatgcttaaccaccgttgaggagaaggcttcatcctttagtaaagcattcatcaaaacattttgatgac 17021674  T
Q  113 attgccatttgtgagcttcaatggttactttttctactagcttacgcca 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17021673 attgccatttgtgagcttcaatggttactttttctactagcttacgcca 17021625  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 16950897 - 16950834
Alignment:
Q  224 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16950897 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 16950834  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 17021562 - 17021499
Alignment:
Q  224 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17021562 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 17021499  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 31328503 - 31328440
Alignment:
Q  224 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 287  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31328503 acgcctataggcagcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 31328440  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 42773321 - 42773258
Alignment:
Q  224 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 287  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42773321 acgcctataggcggcatccttggattgttgtttataccgactctttgcgtcttgcatgagtttt 42773258  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 53747612 - 53747549
Alignment:
Q  224 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 287  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  53747612 acgcctataggcggcatccttgtattgttgattataccgactctttgcgtcttacatgagtttt 53747549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 14184989 - 14184926
Alignment:
Q  224 acgcctataggcggcatccttgtattgttgtttataccgactctttgcgtcttgcatgagtttt 287  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14184989 acgcctataggcggtatccttgtattgttgtttataccaactctttgcgtcttgcatgagtttt 14184926  T

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