View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20698_low_9 (Length: 295)
Name: NF20698_low_9
Description: NF20698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20698_low_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 44722302 - 44722498
Alignment:
| Q |
98 |
caacatcattggaggattagatcaaactaatagggactaaattcattgaacttaaatttctaataaactgaagaattatatttgcaaccagaatactgat |
197 |
Q |
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| T |
44722302 |
caacatcattggaggattagatcaaactaatagggactaaattcattgaacttaaatttctaataaactgaagaattatatttgcaaccagaatactgat |
44722401 |
T |
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| Q |
198 |
ggtgcattagttgtgggcaaagggcttgtccaaccaatgatagggcaattgttggagaaaatgatcacaaaaagtattatatttgcaaccagaattgt |
295 |
Q |
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| T |
44722402 |
ggtgcattagttgtgggcaaagggcttgtccaaccaatgatagggcaattgttggagaaaatgatcac-aaaagtattatatttgcaactagaattgt |
44722498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 44722230 - 44722134
Alignment:
| Q |
1 |
atttctgagattcaaaaatccattgatgctatgcctgacttcatagactgaaccaaggttcacaagatatgtttttctgcactattatcgaacactc |
97 |
Q |
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| T |
44722230 |
atttctgagattcaaaaatccattgaagttatgcctgacttcatagactgaaccaaggttcacaagatatgtttttctgcactattatcgaacactc |
44722134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43952155 - 43952068
Alignment:
| Q |
1 |
atttctgagattcaaaaatccattgatgctatgcctgacttca-tagactgaaccaaggttcacaagatatgtttttctgcactatta |
87 |
Q |
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| T |
43952155 |
atttctgagattcaaaaatcccttgacgtcatgcctgacttcaatagactgaaccaaggttcataagatatgtttttctgcaccatta |
43952068 |
T |
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