View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_high_11 (Length: 300)
Name: NF20699_high_11
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 43813876 - 43813595
Alignment:
| Q |
1 |
gactcatcttttgtattaagttgaagactcaacaaaaactgggacttatatcctctacaacagctctacaataactgcaccggtgctgtctaggcatagg |
100 |
Q |
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| T |
43813876 |
gactcatcttttgtattaagttgaagactcaacaaaaactgggacttatatcctctacaa-----------taactgcaccggtgctgtctaggcatagg |
43813788 |
T |
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| Q |
101 |
atccatgttttgaaaactgctggagtaatctttagaaatagaacaaataatccacctttttacattttaattttaaaatctatacaaatctccccttttt |
200 |
Q |
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| T |
43813787 |
atccatgttttgaaaactgctggagtaatctttagaaatagaacaaataatccacctttttacattttaattttaaaatctatacaaatctccccttttt |
43813688 |
T |
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| Q |
201 |
tatgactgaaaaaacacagtttattgctgtaagtattcactatttccttggctccgaaaaatttatctaccaattcaatataatgatattctt |
293 |
Q |
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| T |
43813687 |
tatgactgaaaaaacacagtttattgctgtaagtattcactatttccttggctccgaaaaatctatctaccaattcaatataatgatattctt |
43813595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 43803631 - 43803540
Alignment:
| Q |
100 |
gatccatgttttgaaaactgctggagtaatctttagaaatagaacaaataatccacctttttacattttaattttaaaatctatacaaatctc |
192 |
Q |
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|||| |||||||||||| ||| |||| ||| | ||||| |||| ||| ||||| || |||||||||||| ||||||||| ||||||||||| |
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| T |
43803631 |
gatctatgttttgaaaagtgcaggagcaatatgtagaactagagcaa-taatctactattttacattttatttttaaaatgcatacaaatctc |
43803540 |
T |
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